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The map label for this gene is ygiK [H]

Identifier: 23100271

GI number: 23100271

Start: 2895532

End: 2896839

Strand: Reverse

Name: ygiK [H]

Synonym: OB2816

Alternate gene names: 23100271

Gene position: 2896839-2895532 (Counterclockwise)

Preceding gene: 23100272

Following gene: 23100270

Centisome position: 79.79

GC content: 36.93

Gene sequence:

>1308_bases
ATGGATATAGCTGTTCAGGCAGGATTAATTCTTCTCGTAGGTATTGTGTTTTTACTCATTATAGGGGTACCAATAGCAAT
TAGTGTAGGAGTCAGTTCTGTTCTTGCTATGTTTACGATATTAGAGTTTGATAATGGTCTTCTCACATCAGCACAGCGTA
TGTTTACAGGAATAAATTCATTTACGTTACTAGCAATCCCATTCTTTGTATTAGCAGGCGTTATTATGAATAATGGAGGC
ATCGCGTCGAAATTAATCAATTGTGCAAAAATTTTAAGTGGAAAAATGCCTGGATCCTTAGCGCATACAAATATTTTAGC
TAATATGCTATTCGGTTCTATTAGTGGATCGGCTGTTGCTGCAGCAGCTGCAGTCGGAAGCACGATGGGAGAGCAACAAG
AAAAGGAAGGCTATAAAAGAGAGTTTAGTGCAGCTGTAAATATAGGCTCCGCACCAACGGGTATGCTCATTCCACCTAGT
AATATTATGATTGTCTTCTCACTAGTTAGTGGTGGTACTTCTATAGCAGCTTTATTTTTAGCTGGATACGTACCTGGACT
TTTGTGGGGCCTTGCTTGTATTTTGGTAGCCCTTATCATTGCGAAGAAGAGAGGTTATAAAAGCCAAATAGAAATAAGTT
GGAAACAAAAATTATTAGTAATACTGGATGCGATACCAAGTCTTCTGCTTATCGTGATCGTAATTGGCGGTATAGTAGGA
GGAGTATTCACCGCTACGGAAGGGTCGGCCATAGCGGTAGTGTATTCCTTGCTATTATCATTTGTCTACCGGTCAATTAA
GATAAGAGATTTACCAAGTATTTTATTAGAAGCTACTAGAACAACTTCTATCGTGGTGTTTTTAATAGGTGTTTCTACCA
TTATGTCTTGGGTAATGTCTTTCACAAACATTCCAGGACTAATCGCTGATTTATTACTTTCCATTTCGGATAACATGATT
ATTATTTTATTAATCATGAATATCGTTTTACTTATTATTGGTACATTTATGGATCCGACTCCGGCAGTACTTATTTTTAC
ACCGATTTTTTTACCTATTGCATTAGATCTAGGAATGGATCCAATTCATTTTGGGATTATGATGGTATTGAATTTAAGTA
TTGGAACGATTACTCCCCCTGTAGGACCGGTTTTATTTGTCGGAGCAAGAGTTGCTAAGTTACCGATAGAAAATGTGATT
AAGCCACTGGCTCCATTTTTTCTAGTAACGATTGTGTTATTATTACTGGTTACTTTTGTTCCAGCTATATCTCTGTTCAT
TCCTAAATTATTTGGAGTAATGGAATAG

Upstream 100 bases:

>100_bases
TTTATTTATTGTATTCTATTGTATCTATAATATCACTAGTATTATTAAAAACAACAAAACCATAGAACAGCTTTAGTTCT
AATAGGAAGGAGATTACTAT

Downstream 100 bases:

>100_bases
AATCTAAATCATAGAGAATGTAATACTAAGATGGAAGGAAAGGTGTTATGGAGACAGTAACTTATGCTGGACCAAAGAAC
ATTTTATTTCAGAATAATCG

Product: C4-dicarboxylate transport system permease large protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MDIAVQAGLILLVGIVFLLIIGVPIAISVGVSSVLAMFTILEFDNGLLTSAQRMFTGINSFTLLAIPFFVLAGVIMNNGG
IASKLINCAKILSGKMPGSLAHTNILANMLFGSISGSAVAAAAAVGSTMGEQQEKEGYKREFSAAVNIGSAPTGMLIPPS
NIMIVFSLVSGGTSIAALFLAGYVPGLLWGLACILVALIIAKKRGYKSQIEISWKQKLLVILDAIPSLLLIVIVIGGIVG
GVFTATEGSAIAVVYSLLLSFVYRSIKIRDLPSILLEATRTTSIVVFLIGVSTIMSWVMSFTNIPGLIADLLLSISDNMI
IILLIMNIVLLIIGTFMDPTPAVLIFTPIFLPIALDLGMDPIHFGIMMVLNLSIGTITPPVGPVLFVGARVAKLPIENVI
KPLAPFFLVTIVLLLLVTFVPAISLFIPKLFGVME

Sequences:

>Translated_435_residues
MDIAVQAGLILLVGIVFLLIIGVPIAISVGVSSVLAMFTILEFDNGLLTSAQRMFTGINSFTLLAIPFFVLAGVIMNNGG
IASKLINCAKILSGKMPGSLAHTNILANMLFGSISGSAVAAAAAVGSTMGEQQEKEGYKREFSAAVNIGSAPTGMLIPPS
NIMIVFSLVSGGTSIAALFLAGYVPGLLWGLACILVALIIAKKRGYKSQIEISWKQKLLVILDAIPSLLLIVIVIGGIVG
GVFTATEGSAIAVVYSLLLSFVYRSIKIRDLPSILLEATRTTSIVVFLIGVSTIMSWVMSFTNIPGLIADLLLSISDNMI
IILLIMNIVLLIIGTFMDPTPAVLIFTPIFLPIALDLGMDPIHFGIMMVLNLSIGTITPPVGPVLFVGARVAKLPIENVI
KPLAPFFLVTIVLLLLVTFVPAISLFIPKLFGVME
>Mature_435_residues
MDIAVQAGLILLVGIVFLLIIGVPIAISVGVSSVLAMFTILEFDNGLLTSAQRMFTGINSFTLLAIPFFVLAGVIMNNGG
IASKLINCAKILSGKMPGSLAHTNILANMLFGSISGSAVAAAAAVGSTMGEQQEKEGYKREFSAAVNIGSAPTGMLIPPS
NIMIVFSLVSGGTSIAALFLAGYVPGLLWGLACILVALIIAKKRGYKSQIEISWKQKLLVILDAIPSLLLIVIVIGGIVG
GVFTATEGSAIAVVYSLLLSFVYRSIKIRDLPSILLEATRTTSIVVFLIGVSTIMSWVMSFTNIPGLIADLLLSISDNMI
IILLIMNIVLLIIGTFMDPTPAVLIFTPIFLPIALDLGMDPIHFGIMMVLNLSIGTITPPVGPVLFVGARVAKLPIENVI
KPLAPFFLVTIVLLLLVTFVPAISLFIPKLFGVME

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yiaN/ygiK family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=402, Percent_Identity=37.0646766169154, Blast_Score=218, Evalue=8e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 45880; Mature: 45880

Theoretical pI: Translated: 8.67; Mature: 8.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIAVQAGLILLVGIVFLLIIGVPIAISVGVSSVLAMFTILEFDNGLLTSAQRMFTGINS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
FTLLAIPFFVLAGVIMNNGGIASKLINCAKILSGKMPGSLAHTNILANMLFGSISGSAVA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHH
AAAAVGSTMGEQQEKEGYKREFSAAVNIGSAPTGMLIPPSNIMIVFSLVSGGTSIAALFL
HHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEECCCCHHHHHHHH
AGYVPGLLWGLACILVALIIAKKRGYKSQIEISWKQKLLVILDAIPSLLLIVIVIGGIVG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVFTATEGSAIAVVYSLLLSFVYRSIKIRDLPSILLEATRTTSIVVFLIGVSTIMSWVMS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTNIPGLIADLLLSISDNMIIILLIMNIVLLIIGTFMDPTPAVLIFTPIFLPIALDLGMD
HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
PIHFGIMMVLNLSIGTITPPVGPVLFVGARVAKLPIENVIKPLAPFFLVTIVLLLLVTFV
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
PAISLFIPKLFGVME
HHHHHHHHHHHHCCC
>Mature Secondary Structure
MDIAVQAGLILLVGIVFLLIIGVPIAISVGVSSVLAMFTILEFDNGLLTSAQRMFTGINS
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCH
FTLLAIPFFVLAGVIMNNGGIASKLINCAKILSGKMPGSLAHTNILANMLFGSISGSAVA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHH
AAAAVGSTMGEQQEKEGYKREFSAAVNIGSAPTGMLIPPSNIMIVFSLVSGGTSIAALFL
HHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCCEEEEEECCCCHHHHHHHH
AGYVPGLLWGLACILVALIIAKKRGYKSQIEISWKQKLLVILDAIPSLLLIVIVIGGIVG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GVFTATEGSAIAVVYSLLLSFVYRSIKIRDLPSILLEATRTTSIVVFLIGVSTIMSWVMS
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FTNIPGLIADLLLSISDNMIIILLIMNIVLLIIGTFMDPTPAVLIFTPIFLPIALDLGMD
HHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC
PIHFGIMMVLNLSIGTITPPVGPVLFVGARVAKLPIENVIKPLAPFFLVTIVLLLLVTFV
HHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
PAISLFIPKLFGVME
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11677609 [H]