| Definition | Oceanobacillus iheyensis HTE831, complete genome. |
|---|---|
| Accession | NC_004193 |
| Length | 3,630,528 |
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The map label for this gene is gmuD [H]
Identifier: 23100218
GI number: 23100218
Start: 2833502
End: 2834899
Strand: Direct
Name: gmuD [H]
Synonym: OB2763
Alternate gene names: 23100218
Gene position: 2833502-2834899 (Clockwise)
Preceding gene: 23100217
Following gene: 23100219
Centisome position: 78.05
GC content: 35.91
Gene sequence:
>1398_bases ATGACAGAACAAAACTATCAATTTCCTGCTGGATTCTGGTGGGGCAGTGCAACTTCTGCAACACAGATTGAAGGTGCAGC AAATCAATATGGAAAAGGACAAAATATATGGGATCACTGGTATAACATACAACCTGAACGATTTTATAATCAAGTTGGTC CAGAGCATACTTCTGACTTTTACCATCGCTATAAAGAAGACATTGCCTTAATGAAAGAATTCGGACATAATTCATTCCGT CTTTCTATATCTTGGTCGAGGCTAATTCCAGATGGAGTAGGTGAAGTAAATGAAGAGGCTGTATCGTTCTATCATAATGT TATTGATGAATTAATCGCCAATGATATCGAACCTTTTGTCAATCTGTTTCATTTTGATATGCCGCTCCCATTGCAAGAAA TTGGTGGCTGGGAAAATCGTGAAGTTATAGAAATGTATCGTCAATATGCGAAAAAAGCATTCGAATTATTTGGAGATAAA GTAAAAAAATGGTTTACATTTAACGAACCAATCGTACCAGTTGAAGGTGGATACCTATATAACTTCCATTACCCAAATGT TGTAGATGCAAAAAGAGCAATACAAGTTGCTTACCATACCATTATAGCTCATGCAACTGCCGTTCAGACTTTTAAAGAAT TGAATATTGAAAATGGAAAAATTGGTATTATCTTAAACTTAACACCATCTTATCCAAGAAGTGAAAACACAGCTGATCAA AAAGCTGCGCATATCGCTGATCTATTCTTTAATCGCAGTTTCTTAGATCCTGCTGTACTAGGAGAGTACCCAGAAGATTT AATTAACCTTTTAAAAGAACATAATCACCTTCCACAAACAGAGGATGGAGATGCAGGATTAATCAAGGAAAACACGATTG ATATTTTAGGGGTGAATTACTATCAACCTAGAAGAGTAAAGGCAAAAGATAATTTGCCAAATCCGTACAGTCCTTTTATG CCTGACTGGTTCTTTGATTCATATGAAATGCCAGGAAGACGCATGAATGAATATCGAGGATGGGAAATCTATGAAAAAGG TGTCTATGATATTATGATTAATCTAAAAGAAAACTACCATAATATCGAATCATTTATTTCAGAAAATGGTATGGGTGTTC AAGGCGAAGAACATTTTATCGAGAATGGACAAATTCAAGATGATTACCGAATCACCTTTATCAAAGATCACTTGAAATGG CTACACCGAGCGATTGATGAGGGTTGTAATGCGAAAGGCTATCACCTTTGGACAACAATGGATAACTGGTCATGGTCAAA CGCTTATAAAAATCGCTACGGATTCTTTTCTGTAAATATTGACACAATGGAACGAACTCCGAAGAAAAGTGCCTATTGGT TTAAACAAATAAGTGAACAAAATGGATTTCACGCATAG
Upstream 100 bases:
>100_bases CTTATTCATTCACAAGATCACTTAATGAATGCGATGACCATTAAAGACTTAGCAATCGAAATCATAGATATATACAGAAA TAAGTAGTGGAGGTTTTACT
Downstream 100 bases:
>100_bases ATATAGATAAAGAATAGATAGAAGGAGTTGTTTTTATGATAAAAAACAACTCCCTTCTCTACGTTAAGGAGGTGGATTAA AATGGACACTAGATTACGTG
Product: beta-glucosidase
Products: NA
Alternate protein names: Aryl-phospho-beta-D-glucosidase BglD; Glucomannan utilization protein D [H]
Number of amino acids: Translated: 465; Mature: 464
Protein sequence:
>465_residues MTEQNYQFPAGFWWGSATSATQIEGAANQYGKGQNIWDHWYNIQPERFYNQVGPEHTSDFYHRYKEDIALMKEFGHNSFR LSISWSRLIPDGVGEVNEEAVSFYHNVIDELIANDIEPFVNLFHFDMPLPLQEIGGWENREVIEMYRQYAKKAFELFGDK VKKWFTFNEPIVPVEGGYLYNFHYPNVVDAKRAIQVAYHTIIAHATAVQTFKELNIENGKIGIILNLTPSYPRSENTADQ KAAHIADLFFNRSFLDPAVLGEYPEDLINLLKEHNHLPQTEDGDAGLIKENTIDILGVNYYQPRRVKAKDNLPNPYSPFM PDWFFDSYEMPGRRMNEYRGWEIYEKGVYDIMINLKENYHNIESFISENGMGVQGEEHFIENGQIQDDYRITFIKDHLKW LHRAIDEGCNAKGYHLWTTMDNWSWSNAYKNRYGFFSVNIDTMERTPKKSAYWFKQISEQNGFHA
Sequences:
>Translated_465_residues MTEQNYQFPAGFWWGSATSATQIEGAANQYGKGQNIWDHWYNIQPERFYNQVGPEHTSDFYHRYKEDIALMKEFGHNSFR LSISWSRLIPDGVGEVNEEAVSFYHNVIDELIANDIEPFVNLFHFDMPLPLQEIGGWENREVIEMYRQYAKKAFELFGDK VKKWFTFNEPIVPVEGGYLYNFHYPNVVDAKRAIQVAYHTIIAHATAVQTFKELNIENGKIGIILNLTPSYPRSENTADQ KAAHIADLFFNRSFLDPAVLGEYPEDLINLLKEHNHLPQTEDGDAGLIKENTIDILGVNYYQPRRVKAKDNLPNPYSPFM PDWFFDSYEMPGRRMNEYRGWEIYEKGVYDIMINLKENYHNIESFISENGMGVQGEEHFIENGQIQDDYRITFIKDHLKW LHRAIDEGCNAKGYHLWTTMDNWSWSNAYKNRYGFFSVNIDTMERTPKKSAYWFKQISEQNGFHA >Mature_464_residues TEQNYQFPAGFWWGSATSATQIEGAANQYGKGQNIWDHWYNIQPERFYNQVGPEHTSDFYHRYKEDIALMKEFGHNSFRL SISWSRLIPDGVGEVNEEAVSFYHNVIDELIANDIEPFVNLFHFDMPLPLQEIGGWENREVIEMYRQYAKKAFELFGDKV KKWFTFNEPIVPVEGGYLYNFHYPNVVDAKRAIQVAYHTIIAHATAVQTFKELNIENGKIGIILNLTPSYPRSENTADQK AAHIADLFFNRSFLDPAVLGEYPEDLINLLKEHNHLPQTEDGDAGLIKENTIDILGVNYYQPRRVKAKDNLPNPYSPFMP DWFFDSYEMPGRRMNEYRGWEIYEKGVYDIMINLKENYHNIESFISENGMGVQGEEHFIENGQIQDDYRITFIKDHLKWL HRAIDEGCNAKGYHLWTTMDNWSWSNAYKNRYGFFSVNIDTMERTPKKSAYWFKQISEQNGFHA
Specific function: Phospho-beta-D-glucosidase that seems to be involved in the degradation of glucomannan. Is also capable of hydrolyzing aryl-phospho-beta-D-glucosides, although very weakly, and plays only a minor role, if any, in the degradation of these substrates in viv
COG id: COG2723
COG function: function code G; Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 1 family [H]
Homologues:
Organism=Homo sapiens, GI110681710, Length=483, Percent_Identity=31.6770186335404, Blast_Score=217, Evalue=2e-56, Organism=Homo sapiens, GI32481206, Length=482, Percent_Identity=30.0829875518672, Blast_Score=210, Evalue=2e-54, Organism=Homo sapiens, GI13273313, Length=485, Percent_Identity=31.1340206185567, Blast_Score=209, Evalue=6e-54, Organism=Homo sapiens, GI28376633, Length=477, Percent_Identity=29.1404612159329, Blast_Score=174, Evalue=2e-43, Organism=Homo sapiens, GI24497614, Length=481, Percent_Identity=28.4823284823285, Blast_Score=152, Evalue=7e-37, Organism=Homo sapiens, GI190360571, Length=98, Percent_Identity=41.8367346938776, Blast_Score=78, Evalue=1e-14, Organism=Escherichia coli, GI2367174, Length=498, Percent_Identity=33.5341365461847, Blast_Score=236, Evalue=2e-63, Organism=Escherichia coli, GI1789070, Length=485, Percent_Identity=34.639175257732, Blast_Score=234, Evalue=1e-62, Organism=Escherichia coli, GI2367270, Length=484, Percent_Identity=31.8181818181818, Blast_Score=204, Evalue=9e-54, Organism=Caenorhabditis elegans, GI17552856, Length=477, Percent_Identity=33.5429769392034, Blast_Score=238, Evalue=6e-63, Organism=Caenorhabditis elegans, GI17539390, Length=469, Percent_Identity=33.6886993603412, Blast_Score=235, Evalue=4e-62, Organism=Drosophila melanogaster, GI21356577, Length=483, Percent_Identity=30.2277432712215, Blast_Score=230, Evalue=2e-60,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001360 - InterPro: IPR018120 - InterPro: IPR017853 - InterPro: IPR013781 [H]
Pfam domain/function: PF00232 Glyco_hydro_1 [H]
EC number: =3.2.1.86 [H]
Molecular weight: Translated: 54531; Mature: 54400
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: PS00572 GLYCOSYL_HYDROL_F1_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEQNYQFPAGFWWGSATSATQIEGAANQYGKGQNIWDHWYNIQPERFYNQVGPEHTSDF CCCCCCCCCCCEECCCCCCCHHCCCCHHHCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHH YHRYKEDIALMKEFGHNSFRLSISWSRLIPDGVGEVNEEAVSFYHNVIDELIANDIEPFV HHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLFHFDMPLPLQEIGGWENREVIEMYRQYAKKAFELFGDKVKKWFTFNEPIVPVEGGYLY HHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE NFHYPNVVDAKRAIQVAYHTIIAHATAVQTFKELNIENGKIGIILNLTPSYPRSENTADQ EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHH KAAHIADLFFNRSFLDPAVLGEYPEDLINLLKEHNHLPQTEDGDAGLIKENTIDILGVNY HHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEEECCC YQPRRVKAKDNLPNPYSPFMPDWFFDSYEMPGRRMNEYRGWEIYEKGVYDIMINLKENYH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEEECHHHHH NIESFISENGMGVQGEEHFIENGQIQDDYRITFIKDHLKWLHRAIDEGCNAKGYHLWTTM HHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEC DNWSWSNAYKNRYGFFSVNIDTMERTPKKSAYWFKQISEQNGFHA CCCCCHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCCC >Mature Secondary Structure TEQNYQFPAGFWWGSATSATQIEGAANQYGKGQNIWDHWYNIQPERFYNQVGPEHTSDF CCCCCCCCCCEECCCCCCCHHCCCCHHHCCCCCCHHHHHCCCCHHHHHHHCCCCHHHHH YHRYKEDIALMKEFGHNSFRLSISWSRLIPDGVGEVNEEAVSFYHNVIDELIANDIEPFV HHHHHHHHHHHHHCCCCEEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH NLFHFDMPLPLQEIGGWENREVIEMYRQYAKKAFELFGDKVKKWFTFNEPIVPVEGGYLY HHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEE NFHYPNVVDAKRAIQVAYHTIIAHATAVQTFKELNIENGKIGIILNLTPSYPRSENTADQ EECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHH KAAHIADLFFNRSFLDPAVLGEYPEDLINLLKEHNHLPQTEDGDAGLIKENTIDILGVNY HHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCEECCCEEEEECCC YQPRRVKAKDNLPNPYSPFMPDWFFDSYEMPGRRMNEYRGWEIYEKGVYDIMINLKENYH CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCEEEEEEECHHHHH NIESFISENGMGVQGEEHFIENGQIQDDYRITFIKDHLKWLHRAIDEGCNAKGYHLWTTM HHHHHHHCCCCCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCEEEEEEC DNWSWSNAYKNRYGFFSVNIDTMERTPKKSAYWFKQISEQNGFHA CCCCCHHHHHCCCCEEEEEEHHHHCCCCHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9202461; 9384377 [H]