Click here to switch to the map view.

The map label for this gene is ybgL [C]

Identifier: 23100132

GI number: 23100132

Start: 2748276

End: 2749049

Strand: Reverse

Name: ybgL [C]

Synonym: OB2677

Alternate gene names: 23100132

Gene position: 2749049-2748276 (Counterclockwise)

Preceding gene: 23100133

Following gene: 23100131

Centisome position: 75.72

GC content: 37.98

Gene sequence:

>774_bases
ATGCAATATCAAGTAGATTTAAATAGTGACATCGGTGAAAGTTATGGTGCTTATACGATTGGTCAAGATGATGAGGTAAT
GGAATTTATTACTTCTGCTAACATCGCATGTGGGTATCATGCTGGGGATCATAATATTATTCACCGCACAATTGACTTGG
CGATAAAAAATAACGTAGCGATTGGTGCGCACCCAGGATTGCAGGATTTGATCGGATTTGGTAGAAGACCAATGCAAATT
TCACCGGAAGAAGTCTATCAACTAACGGTCTATCAAATTGGAGCAGTACAAGCCTTTGCACAGGTGAAAGGGCATAATCT
TTACCATGTTAAACCTCATGGAGCTCTATATAATATGGCGGCAAAGGATACAGCTATTGCTAAAGCGATTGCGCAAGCAG
TTTATGATTACAATCCAAACTTAATATTGTTTGGACTTGCTAATTCAGAATTAATTCGCATGGGCAAAGAAGTAGGACTT
AATGTTGCAAATGAAGTTTTTGCTGATCGAACGTATCAACCAGATGGAAGTCTAACCCCTCGTACGTCACCGAATGCTAT
GATTCATGATACTGACGAAGCGGTAGAACGTGTGATACGAATGGTTAAAGAAAATAAAATAGAAGCAGTTGACGGGACAG
ATATAAGTATTATTGCTGATACAATTTGTATACACGGTGATGGACCAAAATCGTTAGAATTTTCAAGACGTTTATCACAT
GAACTAAAAAACCAAGGTATATCCATTCAAAAGAGAGAAATGCATCATGGTTAA

Upstream 100 bases:

>100_bases
TACCAATTGACCGTCAAGAATTTGACGATATTACAAAAAAGGTGGAGACAGGAAGTTTTCACCCTACGATAGAGACTTAA
ATCTTAGGGGGATATGACGA

Downstream 100 bases:

>100_bases
ATGTTTCGAAGTGATGAAGCCTGGATTAGCTACTTCAGTACAAGACCTTGGAAGAACTGGATATCAGCAATACGGAGTAG
TTGTATCAGGGGTGATGGAT

Product: LamB/YcsF family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MQYQVDLNSDIGESYGAYTIGQDDEVMEFITSANIACGYHAGDHNIIHRTIDLAIKNNVAIGAHPGLQDLIGFGRRPMQI
SPEEVYQLTVYQIGAVQAFAQVKGHNLYHVKPHGALYNMAAKDTAIAKAIAQAVYDYNPNLILFGLANSELIRMGKEVGL
NVANEVFADRTYQPDGSLTPRTSPNAMIHDTDEAVERVIRMVKENKIEAVDGTDISIIADTICIHGDGPKSLEFSRRLSH
ELKNQGISIQKREMHHG

Sequences:

>Translated_257_residues
MQYQVDLNSDIGESYGAYTIGQDDEVMEFITSANIACGYHAGDHNIIHRTIDLAIKNNVAIGAHPGLQDLIGFGRRPMQI
SPEEVYQLTVYQIGAVQAFAQVKGHNLYHVKPHGALYNMAAKDTAIAKAIAQAVYDYNPNLILFGLANSELIRMGKEVGL
NVANEVFADRTYQPDGSLTPRTSPNAMIHDTDEAVERVIRMVKENKIEAVDGTDISIIADTICIHGDGPKSLEFSRRLSH
ELKNQGISIQKREMHHG
>Mature_257_residues
MQYQVDLNSDIGESYGAYTIGQDDEVMEFITSANIACGYHAGDHNIIHRTIDLAIKNNVAIGAHPGLQDLIGFGRRPMQI
SPEEVYQLTVYQIGAVQAFAQVKGHNLYHVKPHGALYNMAAKDTAIAKAIAQAVYDYNPNLILFGLANSELIRMGKEVGL
NVANEVFADRTYQPDGSLTPRTSPNAMIHDTDEAVERVIRMVKENKIEAVDGTDISIIADTICIHGDGPKSLEFSRRLSH
ELKNQGISIQKREMHHG

Specific function: Unknown

COG id: COG1540

COG function: function code R; Uncharacterized proteins, homologs of lactam utilization protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0271 (lamB) family

Homologues:

Organism=Escherichia coli, GI1786931, Length=246, Percent_Identity=47.9674796747967, Blast_Score=250, Evalue=7e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2677_OCEIH (Q8EN13)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_693598.1
- ProteinModelPortal:   Q8EN13
- SMR:   Q8EN13
- GeneID:   1017049
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB2677
- NMPDR:   fig|221109.1.peg.2677
- HOGENOM:   HBG482818
- OMA:   IADTICI
- ProtClustDB:   PRK05406
- BioCyc:   OIHE221109:OB2677-MONOMER
- HAMAP:   MF_00691
- InterPro:   IPR011330
- InterPro:   IPR005501

Pfam domain/function: PF03746 LamB_YcsF; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 28341; Mature: 28341

Theoretical pI: Translated: 5.90; Mature: 5.90

Prosite motif: PS00659 GLYCOSYL_HYDROL_F5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQYQVDLNSDIGESYGAYTIGQDDEVMEFITSANIACGYHAGDHNIIHRTIDLAIKNNVA
CEEEEECCCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCEE
IGAHPGLQDLIGFGRRPMQISPEEVYQLTVYQIGAVQAFAQVKGHNLYHVKPHGALYNMA
ECCCCCHHHHHHCCCCCCEECHHHHHEEHHHHHHHHHHHHHHCCCCEEEECCCCCEEECH
AKDTAIAKAIAQAVYDYNPNLILFGLANSELIRMGKEVGLNVANEVFADRTYQPDGSLTP
HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
RTSPNAMIHDTDEAVERVIRMVKENKIEAVDGTDISIIADTICIHGDGPKSLEFSRRLSH
CCCCCCEEECCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHH
ELKNQGISIQKREMHHG
HHHHCCCCEEHHCCCCC
>Mature Secondary Structure
MQYQVDLNSDIGESYGAYTIGQDDEVMEFITSANIACGYHAGDHNIIHRTIDLAIKNNVA
CEEEEECCCCCCCCCCCEECCCCHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEECCEE
IGAHPGLQDLIGFGRRPMQISPEEVYQLTVYQIGAVQAFAQVKGHNLYHVKPHGALYNMA
ECCCCCHHHHHHCCCCCCEECHHHHHEEHHHHHHHHHHHHHHCCCCEEEECCCCCEEECH
AKDTAIAKAIAQAVYDYNPNLILFGLANSELIRMGKEVGLNVANEVFADRTYQPDGSLTP
HHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
RTSPNAMIHDTDEAVERVIRMVKENKIEAVDGTDISIIADTICIHGDGPKSLEFSRRLSH
CCCCCCEEECCHHHHHHHHHHHHHCCEEEECCCCEEEEEEEEEEECCCCCCHHHHHHHHH
ELKNQGISIQKREMHHG
HHHHCCCCEEHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376