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The map label for this gene is sigO [H]

Identifier: 23100001

GI number: 23100001

Start: 2602309

End: 2602929

Strand: Direct

Name: sigO [H]

Synonym: OB2546

Alternate gene names: 23100001

Gene position: 2602309-2602929 (Clockwise)

Preceding gene: 23099995

Following gene: 23100002

Centisome position: 71.68

GC content: 36.71

Gene sequence:

>621_bases
ATGAGTAATCAAGGAGTATCACCTGAAGAAATTCGCCACTTTCATTGTGCACAGAAATTTGTCAAAGATAATGAGCTAAT
TTTTCGTAATGCTTTACTTCAGTCATTTATGCAGTCTCCGGAACATTGGGCGTTATTAGAAGAATCTCTAAATTGTCCGA
GCTCTGATGCCACAAGATTGTTAGATAAAAAGTTTAAAGAACACTTCTCAGAAATATCACTAATTAGTCTTTTATCGAAT
GAAATTCGCAGGTTTGCTATCCGCTATGATCAACGCTATCGTCGTAATACAAAAAGACAGATGCTCATTCTCGACCGGCC
ACGATATCACGACTCCCAAGTAACCACTTGGATGGAATTAATTCCATCTAAACAAACATTAGAACAAGAAGCTTTTCAAA
CGGAAGGACGTTTAGAAAATAGAGTGGAAAACCCGATTATTCATAAAGCAATAAACCAATTAACAGCCAGACAGAAATTC
ATTCTAGAAGCAGCATATATTCATGAGTGTACCGATACAGAAATTGCCCAAATAGATGGTGTCTCACAACAAACAATTAG
CAAAACAAGGAAAAAAGCGTTGCAAAACATTTACTCGTTTTTGCAAAGGGAGGGAGAATGA

Upstream 100 bases:

>100_bases
GTAAATTTTCAATATAATATACAAAATTAACCATATATTGGTTGTGAACAGGTCCTTTATTTTGCCTTTATCACAATATA
GAAGGGAGGAGAGAATTAGG

Downstream 100 bases:

>100_bases
TGAGCGATATTTCAATCATGACCTATCTTACATCCTTGTTAGAAAATGTTGGATTCCCTGTTATGGTCACCTTATTCTTA
TTAATTCGATATGAAATCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSNQGVSPEEIRHFHCAQKFVKDNELIFRNALLQSFMQSPEHWALLEESLNCPSSDATRLLDKKFKEHFSEISLISLLSN
EIRRFAIRYDQRYRRNTKRQMLILDRPRYHDSQVTTWMELIPSKQTLEQEAFQTEGRLENRVENPIIHKAINQLTARQKF
ILEAAYIHECTDTEIAQIDGVSQQTISKTRKKALQNIYSFLQREGE

Sequences:

>Translated_206_residues
MSNQGVSPEEIRHFHCAQKFVKDNELIFRNALLQSFMQSPEHWALLEESLNCPSSDATRLLDKKFKEHFSEISLISLLSN
EIRRFAIRYDQRYRRNTKRQMLILDRPRYHDSQVTTWMELIPSKQTLEQEAFQTEGRLENRVENPIIHKAINQLTARQKF
ILEAAYIHECTDTEIAQIDGVSQQTISKTRKKALQNIYSFLQREGE
>Mature_205_residues
SNQGVSPEEIRHFHCAQKFVKDNELIFRNALLQSFMQSPEHWALLEESLNCPSSDATRLLDKKFKEHFSEISLISLLSNE
IRRFAIRYDQRYRRNTKRQMLILDRPRYHDSQVTTWMELIPSKQTLEQEAFQTEGRLENRVENPIIHKAINQLTARQKFI
LEAAYIHECTDTEIAQIDGVSQQTISKTRKKALQNIYSFLQREGE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Together with its coactivator rsoA, positively regulates the expression of at least three operons, including oxdC-yvrL,

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007630
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 24340; Mature: 24209

Theoretical pI: Translated: 8.10; Mature: 8.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQGVSPEEIRHFHCAQKFVKDNELIFRNALLQSFMQSPEHWALLEESLNCPSSDATRL
CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
LDKKFKEHFSEISLISLLSNEIRRFAIRYDQRYRRNTKRQMLILDRPRYHDSQVTTWMEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
IPSKQTLEQEAFQTEGRLENRVENPIIHKAINQLTARQKFILEAAYIHECTDTEIAQIDG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
VSQQTISKTRKKALQNIYSFLQREGE
CHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SNQGVSPEEIRHFHCAQKFVKDNELIFRNALLQSFMQSPEHWALLEESLNCPSSDATRL
CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHH
LDKKFKEHFSEISLISLLSNEIRRFAIRYDQRYRRNTKRQMLILDRPRYHDSQVTTWMEL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHH
IPSKQTLEQEAFQTEGRLENRVENPIIHKAINQLTARQKFILEAAYIHECTDTEIAQIDG
CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
VSQQTISKTRKKALQNIYSFLQREGE
CHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]