Click here to switch to the map view.

The map label for this gene is ykcC [H]

Identifier: 23099874

GI number: 23099874

Start: 2473419

End: 2474384

Strand: Reverse

Name: ykcC [H]

Synonym: OB2419

Alternate gene names: 23099874

Gene position: 2474384-2473419 (Counterclockwise)

Preceding gene: 23099875

Following gene: 23099873

Centisome position: 68.15

GC content: 35.71

Gene sequence:

>966_bases
ATGGGAATCTCCTACAAAAATGAACCAGTAATTTCAGTTGTAGTACCTGTTTATGGTTGCAAAACCTGCCTTGTAGAATT
ATGTAGTCGTATTAAAGAGACGGTACTGTCCATTCCAGCTCAATATGAAATAATACTCGTCAACGACGCAAGTCCAGATC
AAGCGTGGGAAGTAATTGCAAGATTGCATGAACAGGACAATAAAATTAAAGGTATTGATTTAGCTAAAAATTTTGGGCAA
CATCATGCGATAACTGCAGGATTGGACTATGCTCAAGGAGATTGGGTTGTGGTCATGGATTGTGATCTTCAAGATCGGCC
AGAAGAAATCAAGTTATTATTTGAAAAGGCAATGGAAGGATATGACGTGGTTTTCGCACAGCGTGTAAAACGTCAAGATA
AATCAATCAAGCGTCTTTCTTCCAAACTTTTTTATAAAATATATGATTATTTCGCTGGGCAAGAGAGTGATGCATCTATT
GCTAATTACAGTATTATCTCTTCGAAAGTTGCAAGCAGTTATCGAAAAATGAGAGAGCAAAATAGATATTACCCGATGTT
TATCAAATGGTTGGGATTCAAGCAAACGAAGATACCAGTGCAACATGATCAACGAAAAGAAGGAGAATCATCTTATAACC
TGAAAAAACTAGTTTCATTAGCTACTGATGCGATTGTTTCCCAATCGAATAAACCACTCCGAATTTCGATTAGTTTTGGG
TTTTTGATGTCGTTGGTCTCCTTTGTGTATGCAGTCTATTTATTTGGTAGATATTTCTTTTTAGACGAACATGTACAGGG
GTGGACGAGTGTAATGGTATCTATTTTCTTTATTGGTGGTTTAATATTTTTCCAATTTGGAATTATAGGTTTGTATTTAG
GCAAAATTTTTAATGAAACAAAGAACAGACCGATTTATACCGTTCGAAATGTAATAGGAGAAAAACAAGAAGATGGGGTT
GATTAG

Upstream 100 bases:

>100_bases
ATGCAATTGACGATCGTAAATTAAGAAATGAATTACAATGGGAACCAAAACAAACATTAGAGAATGGACTGAAACAAACT
ATTGAGTGGTATATAAGAAA

Downstream 100 bases:

>100_bases
ATGATAAAAACATACTTAGAGCCTACGCCATGGGATCGACGTAATTTCCCATTTGAAACATATCAACTAACAGAATATAG
TGAAGCAGCTTTAAGAGAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 320

Protein sequence:

>321_residues
MGISYKNEPVISVVVPVYGCKTCLVELCSRIKETVLSIPAQYEIILVNDASPDQAWEVIARLHEQDNKIKGIDLAKNFGQ
HHAITAGLDYAQGDWVVVMDCDLQDRPEEIKLLFEKAMEGYDVVFAQRVKRQDKSIKRLSSKLFYKIYDYFAGQESDASI
ANYSIISSKVASSYRKMREQNRYYPMFIKWLGFKQTKIPVQHDQRKEGESSYNLKKLVSLATDAIVSQSNKPLRISISFG
FLMSLVSFVYAVYLFGRYFFLDEHVQGWTSVMVSIFFIGGLIFFQFGIIGLYLGKIFNETKNRPIYTVRNVIGEKQEDGV
D

Sequences:

>Translated_321_residues
MGISYKNEPVISVVVPVYGCKTCLVELCSRIKETVLSIPAQYEIILVNDASPDQAWEVIARLHEQDNKIKGIDLAKNFGQ
HHAITAGLDYAQGDWVVVMDCDLQDRPEEIKLLFEKAMEGYDVVFAQRVKRQDKSIKRLSSKLFYKIYDYFAGQESDASI
ANYSIISSKVASSYRKMREQNRYYPMFIKWLGFKQTKIPVQHDQRKEGESSYNLKKLVSLATDAIVSQSNKPLRISISFG
FLMSLVSFVYAVYLFGRYFFLDEHVQGWTSVMVSIFFIGGLIFFQFGIIGLYLGKIFNETKNRPIYTVRNVIGEKQEDGV
D
>Mature_320_residues
GISYKNEPVISVVVPVYGCKTCLVELCSRIKETVLSIPAQYEIILVNDASPDQAWEVIARLHEQDNKIKGIDLAKNFGQH
HAITAGLDYAQGDWVVVMDCDLQDRPEEIKLLFEKAMEGYDVVFAQRVKRQDKSIKRLSSKLFYKIYDYFAGQESDASIA
NYSIISSKVASSYRKMREQNRYYPMFIKWLGFKQTKIPVQHDQRKEGESSYNLKKLVSLATDAIVSQSNKPLRISISFGF
LMSLVSFVYAVYLFGRYFFLDEHVQGWTSVMVSIFFIGGLIFFQFGIIGLYLGKIFNETKNRPIYTVRNVIGEKQEDGVD

Specific function: Involved In O Antigen Modification. Catalyzes The Transfer Of The Glucose Residue From Udp-Glucose To A Lipid Carrier (By Similarity). [C]

COG id: COG0463

COG function: function code M; Glycosyltransferases involved in cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family. GtrB subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788692, Length=302, Percent_Identity=31.4569536423841, Blast_Score=174, Evalue=1e-44,
Organism=Escherichia coli, GI1788588, Length=309, Percent_Identity=31.0679611650485, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.4.1.- [C]

Molecular weight: Translated: 36803; Mature: 36672

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGISYKNEPVISVVVPVYGCKTCLVELCSRIKETVLSIPAQYEIILVNDASPDQAWEVIA
CCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
RLHEQDNKIKGIDLAKNFGQHHAITAGLDYAQGDWVVVMDCDLQDRPEEIKLLFEKAMEG
HHHHCCCCCCCHHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCC
YDVVFAQRVKRQDKSIKRLSSKLFYKIYDYFAGQESDASIANYSIISSKVASSYRKMREQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
NRYYPMFIKWLGFKQTKIPVQHDQRKEGESSYNLKKLVSLATDAIVSQSNKPLRISISFG
CCCCHHHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEHH
FLMSLVSFVYAVYLFGRYFFLDEHVQGWTSVMVSIFFIGGLIFFQFGIIGLYLGKIFNET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KNRPIYTVRNVIGEKQEDGVD
CCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
GISYKNEPVISVVVPVYGCKTCLVELCSRIKETVLSIPAQYEIILVNDASPDQAWEVIA
CCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH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CCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]