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The map label for this gene is sigV [H]

Identifier: 23099768

GI number: 23099768

Start: 2363191

End: 2363658

Strand: Reverse

Name: sigV [H]

Synonym: OB2313

Alternate gene names: 23099768

Gene position: 2363658-2363191 (Counterclockwise)

Preceding gene: 23099769

Following gene: 23099766

Centisome position: 65.11

GC content: 29.91

Gene sequence:

>468_bases
ATGGCATTATTTCACAGTTATGAGAAAAATCTATACCGCATTGCGAATACATATGTAAAGAATTCTAATGATACATATGA
TGTAATTCAAGAAACAGCTTATCGAACATATGAAAAATTACCTGAGTTAAGAAATCCGCAATATTTTAAGACGTGGATCA
CAAAAATAACCATTAATTGTGCACTTGATACGATAAGGAAGAATAAAAAGATGATCATAATGGAACCAGAAAAAGTGTCT
ACAAAAGCTTATTATGATTTGGATATTCCATTAAAGATTACCGTAGAGCAACTATTAGATCGTCTAAATGAAAAAGAAAG
AACCATTATCGTGCTCCGATTTTATTACGCATTAAGTTTCAAAGAAATTTCAGAACAATTAGATATTCCGTATGGTACTA
CAAAATCATTATCTTACCGCGCGCTAAAGAAATTAAAGTATTTTGCAAATAAGCAGGAATTACAATAA

Upstream 100 bases:

>100_bases
ATTATGGTATTATGACAAAAAATATATTATACATTGCAAAGCAGGTGGTAGTATCATTGAACTAGTAGAAGAAGCACAAA
AAGGGAATCAAGAATCATTT

Downstream 100 bases:

>100_bases
AAGAGAGCGAGGAAAATGAAACAAAATTTCATGATTAGTTGAAATAAGCGACACTCCTTAGAAATAAATTTCAACATCAT
TTGTGTGATAACATTTTTTC

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MALFHSYEKNLYRIANTYVKNSNDTYDVIQETAYRTYEKLPELRNPQYFKTWITKITINCALDTIRKNKKMIIMEPEKVS
TKAYYDLDIPLKITVEQLLDRLNEKERTIIVLRFYYALSFKEISEQLDIPYGTTKSLSYRALKKLKYFANKQELQ

Sequences:

>Translated_155_residues
MALFHSYEKNLYRIANTYVKNSNDTYDVIQETAYRTYEKLPELRNPQYFKTWITKITINCALDTIRKNKKMIIMEPEKVS
TKAYYDLDIPLKITVEQLLDRLNEKERTIIVLRFYYALSFKEISEQLDIPYGTTKSLSYRALKKLKYFANKQELQ
>Mature_154_residues
ALFHSYEKNLYRIANTYVKNSNDTYDVIQETAYRTYEKLPELRNPQYFKTWITKITINCALDTIRKNKKMIIMEPEKVST
KAYYDLDIPLKITVEQLLDRLNEKERTIIVLRFYYALSFKEISEQLDIPYGTTKSLSYRALKKLKYFANKQELQ

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Positively regulates the expression of proteins involved in stress responses against bacitracin, paraquat and tellurite

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18605; Mature: 18474

Theoretical pI: Translated: 9.68; Mature: 9.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFHSYEKNLYRIANTYVKNSNDTYDVIQETAYRTYEKLPELRNPQYFKTWITKITINC
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ALDTIRKNKKMIIMEPEKVSTKAYYDLDIPLKITVEQLLDRLNEKERTIIVLRFYYALSF
HHHHHHCCCCEEEECCCCCCCEEEEECCCCCEEEHHHHHHHCCCCCCEEEEEHHHHHHHH
KEISEQLDIPYGTTKSLSYRALKKLKYFANKQELQ
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ALFHSYEKNLYRIANTYVKNSNDTYDVIQETAYRTYEKLPELRNPQYFKTWITKITINC
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
ALDTIRKNKKMIIMEPEKVSTKAYYDLDIPLKITVEQLLDRLNEKERTIIVLRFYYALSF
HHHHHHCCCCEEEECCCCCCCEEEEECCCCCEEEHHHHHHHCCCCCCEEEEEHHHHHHHH
KEISEQLDIPYGTTKSLSYRALKKLKYFANKQELQ
HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]