| Definition | Oceanobacillus iheyensis HTE831, complete genome. |
|---|---|
| Accession | NC_004193 |
| Length | 3,630,528 |
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The map label for this gene is comEC [H]
Identifier: 23099434
GI number: 23099434
Start: 2006981
End: 2009290
Strand: Reverse
Name: comEC [H]
Synonym: OB1979
Alternate gene names: 23099434
Gene position: 2009290-2006981 (Counterclockwise)
Preceding gene: 23099435
Following gene: 23099432
Centisome position: 55.34
GC content: 33.16
Gene sequence:
>2310_bases ATGAAAGGGTATTGGTATTATGCTGCGATAACAACAGGGGCAGCTATTCTTTTTGTTATTACTAGAGCAGAATGGCTGCC GCTGTTAATTATTCTTTGGTTAATTTGGTTAAAGACGCGTAAGGGATTACCCACTTTACCTTTTATAATTTCAATAATTT CTTTCTGTTTTTTTATATTCTATATCCCTGAGGTTGAAGAAGGGGTCGAGAAGGAAGACTTCCAACACCAATCGTCACCA TTAACTGGTAGCATTAATGGATCGGTCGTCATAACAGAAGACTATATGCAATTTCAGTTGGATGGATCACAATCTGAATC GAATGTTAACTTTTTGGTTATGTACTTTTTTGACCAATCTCCACGATCACAAGCATTATTCGTTAAGAATAACGAATTAT TACATGGTGCCACATGTACAATTTATACCTCTCACGAATCTATAGAAAAACCACCATCGAGTACTAACCCTGCCCAATTT AATTATCAACAATTTCTTCTTCAAAAAGATATTCACTATCAAATCATTATGGAAGATGTAGACCAACTACACTGTACAAA TCCGAAACCATTAAGTCATATATATTTGTTACGCCATCAACTTATTGATTACGTGAAAGGAAGGTGGAGTGATGAAACTG TTACATGGTTAACCTCTATTGTATTTGGTGATGATTCTATGATGGATGAACCTACGGAAGAATTATTTCAACGATGGAGT TTATCTCATATCATTGCAATCTCAGGATCAAATATCACTTTAATAATTACAATTGTGTTCTTATTACTAGTAAAAGGAAA TATTGTTACAAAAGAAAGGGCGCAAACGCTTTTAATTTTATTTTTACCTTTTTATGGGATATTAGCCGGCGGGGAGCCTT CGGTTTGGAGAGCAGTTTGGATGATTACGATATTGCTTATCGTACAAAAGTTTAAAAAGAAATTTCTGTATATAGATATA TTTAGTTTTGTATTTATGTCATTAATTCTTTTTGATCCTTACGTTATATATGAACTGGGATTTCAATTTTCCTTTGCGGT CACCTTTGGCATTCTTCTATCCGCCAAATGGATAACTCATTCAACCTCAACTCTATGGAATATAGTCCAGATCAGTTTTG TATCTCAAATGGCTATCCTCCCACTACAATTACATTATTTTTATATTTTTCAACCACTATCGATTCTACTCAATGTCATT ATTATTCCTTACTTCACCTTTTTGGTCATACCATTTATGTATATTGCTACGTTATTTTCTTTCTTTCCAAAGCATTTGCT TCTCATTTTAGATAATTCTTTTCAATGGATTCATTCTATCGTAGTAGCTTTTCTAGTATGGGTTGACACTTATTTGTCAT TTCCTTTGCTTATGAGCGGGTTATCTATTGCGGCGGTATTTGCTTATTATATTTTTTTCTTTCGATTTATGTATGAACTA GAGCTAAAAAGAATGAAGATGGCATTTTTATCAGGAGTACTTTTTTGCCTACCTGTAATCATTGGAGCATTGAAACCATA TGTAAGTGACGAAGGAATTGTTACAATGTTTGACATTGGACAAGGAGATGCCATCTTAATTGAGACTCCGTACAGACAAG ACACAATTTTATTGGATGCAGGATCAACCTTTGATTTTGAAAGTATGGAGGCAAATAGAGGTGTATATAAACAAATATTA CGTCCTTATTTTTATTCCAGGGGGATAACGCATTTGGATGCAATTATATTGACACATGAAGACTTGGATCATATTGGAAG TCTGGAGTATATTTTAGAAGAAGTAACCGTTGATACAATTTTGGTCAGTTCATTTTTTGATGATCAGATAATCAATGATA TTCAGTCTTTATTTCCAAAGCAAATTATTAAAAGAATTGAAGCAGGGCAGATAATCAAAGCCGATTTTACTAATTTTTAT GTTCTTTCTCCAACTAGTGATCATCAGACGGTAAATGATAATTCATTAGTAATGTATGCTGATTTAGGGGGCAAATGGCT TTTTACTGGAGATATAGGAAGCGGAGTAGAAAAGTCATTATTAAATAATCATCCAGAAATGAATATCGATATTCTAAAAA TTGCTCATCATGGAAGTGATACGTCCAGTGATAGTGAATTTATTGAAAAAATAGATCCTGATTTTGGATTGATATCGGTA GGTAGAAATAATCGATATGGTCATCCCGCGGTTGAAGTAATTGAAACAATGGAATCAAAAAGCATTGATATTCTACGTAC AGATATGCATGGTGCCATCCAATATTTTTTTTCAAATAATCAAGGAACATTTTTAATACATTTGCCATAA
Upstream 100 bases:
>100_bases CAAGAGATAATTGCTAAAATTGATGAAGTATCAGGGAATGATACGGAAATCTCCCGTATTAAAGAAAAAGCAGAGCGCCT ATTTAAGTAGGTACATATCG
Downstream 100 bases:
>100_bases ACTATCTTTGTAAAGAAAATAAAAAAGAAGAGATGCTATAATCCCTTCCTTTTTGTAATTCATTCTTCAATTATTGACCG ATAAAACTAATTACTACGCC
Product: late competence protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 769; Mature: 769
Protein sequence:
>769_residues MKGYWYYAAITTGAAILFVITRAEWLPLLIILWLIWLKTRKGLPTLPFIISIISFCFFIFYIPEVEEGVEKEDFQHQSSP LTGSINGSVVITEDYMQFQLDGSQSESNVNFLVMYFFDQSPRSQALFVKNNELLHGATCTIYTSHESIEKPPSSTNPAQF NYQQFLLQKDIHYQIIMEDVDQLHCTNPKPLSHIYLLRHQLIDYVKGRWSDETVTWLTSIVFGDDSMMDEPTEELFQRWS LSHIIAISGSNITLIITIVFLLLVKGNIVTKERAQTLLILFLPFYGILAGGEPSVWRAVWMITILLIVQKFKKKFLYIDI FSFVFMSLILFDPYVIYELGFQFSFAVTFGILLSAKWITHSTSTLWNIVQISFVSQMAILPLQLHYFYIFQPLSILLNVI IIPYFTFLVIPFMYIATLFSFFPKHLLLILDNSFQWIHSIVVAFLVWVDTYLSFPLLMSGLSIAAVFAYYIFFFRFMYEL ELKRMKMAFLSGVLFCLPVIIGALKPYVSDEGIVTMFDIGQGDAILIETPYRQDTILLDAGSTFDFESMEANRGVYKQIL RPYFYSRGITHLDAIILTHEDLDHIGSLEYILEEVTVDTILVSSFFDDQIINDIQSLFPKQIIKRIEAGQIIKADFTNFY VLSPTSDHQTVNDNSLVMYADLGGKWLFTGDIGSGVEKSLLNNHPEMNIDILKIAHHGSDTSSDSEFIEKIDPDFGLISV GRNNRYGHPAVEVIETMESKSIDILRTDMHGAIQYFFSNNQGTFLIHLP
Sequences:
>Translated_769_residues MKGYWYYAAITTGAAILFVITRAEWLPLLIILWLIWLKTRKGLPTLPFIISIISFCFFIFYIPEVEEGVEKEDFQHQSSP LTGSINGSVVITEDYMQFQLDGSQSESNVNFLVMYFFDQSPRSQALFVKNNELLHGATCTIYTSHESIEKPPSSTNPAQF NYQQFLLQKDIHYQIIMEDVDQLHCTNPKPLSHIYLLRHQLIDYVKGRWSDETVTWLTSIVFGDDSMMDEPTEELFQRWS LSHIIAISGSNITLIITIVFLLLVKGNIVTKERAQTLLILFLPFYGILAGGEPSVWRAVWMITILLIVQKFKKKFLYIDI FSFVFMSLILFDPYVIYELGFQFSFAVTFGILLSAKWITHSTSTLWNIVQISFVSQMAILPLQLHYFYIFQPLSILLNVI IIPYFTFLVIPFMYIATLFSFFPKHLLLILDNSFQWIHSIVVAFLVWVDTYLSFPLLMSGLSIAAVFAYYIFFFRFMYEL ELKRMKMAFLSGVLFCLPVIIGALKPYVSDEGIVTMFDIGQGDAILIETPYRQDTILLDAGSTFDFESMEANRGVYKQIL RPYFYSRGITHLDAIILTHEDLDHIGSLEYILEEVTVDTILVSSFFDDQIINDIQSLFPKQIIKRIEAGQIIKADFTNFY VLSPTSDHQTVNDNSLVMYADLGGKWLFTGDIGSGVEKSLLNNHPEMNIDILKIAHHGSDTSSDSEFIEKIDPDFGLISV GRNNRYGHPAVEVIETMESKSIDILRTDMHGAIQYFFSNNQGTFLIHLP >Mature_769_residues MKGYWYYAAITTGAAILFVITRAEWLPLLIILWLIWLKTRKGLPTLPFIISIISFCFFIFYIPEVEEGVEKEDFQHQSSP LTGSINGSVVITEDYMQFQLDGSQSESNVNFLVMYFFDQSPRSQALFVKNNELLHGATCTIYTSHESIEKPPSSTNPAQF NYQQFLLQKDIHYQIIMEDVDQLHCTNPKPLSHIYLLRHQLIDYVKGRWSDETVTWLTSIVFGDDSMMDEPTEELFQRWS LSHIIAISGSNITLIITIVFLLLVKGNIVTKERAQTLLILFLPFYGILAGGEPSVWRAVWMITILLIVQKFKKKFLYIDI FSFVFMSLILFDPYVIYELGFQFSFAVTFGILLSAKWITHSTSTLWNIVQISFVSQMAILPLQLHYFYIFQPLSILLNVI IIPYFTFLVIPFMYIATLFSFFPKHLLLILDNSFQWIHSIVVAFLVWVDTYLSFPLLMSGLSIAAVFAYYIFFFRFMYEL ELKRMKMAFLSGVLFCLPVIIGALKPYVSDEGIVTMFDIGQGDAILIETPYRQDTILLDAGSTFDFESMEANRGVYKQIL RPYFYSRGITHLDAIILTHEDLDHIGSLEYILEEVTVDTILVSSFFDDQIINDIQSLFPKQIIKRIEAGQIIKADFTNFY VLSPTSDHQTVNDNSLVMYADLGGKWLFTGDIGSGVEKSLLNNHPEMNIDILKIAHHGSDTSSDSEFIEKIDPDFGLISV GRNNRYGHPAVEVIETMESKSIDILRTDMHGAIQYFFSNNQGTFLIHLP
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG2333
COG function: function code R; Predicted hydrolase (metallo-beta-lactamase superfamily)
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=537, Percent_Identity=24.3947858472998, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 88316; Mature: 88316
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKGYWYYAAITTGAAILFVITRAEWLPLLIILWLIWLKTRKGLPTLPFIISIISFCFFIF CCCEEEEEEHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YIPEVEEGVEKEDFQHQSSPLTGSINGSVVITEDYMQFQLDGSQSESNVNFLVMYFFDQS CCCCHHCCCCHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCEEEEEEECCC PRSQALFVKNNELLHGATCTIYTSHESIEKPPSSTNPAQFNYQQFLLQKDIHYQIIMEDV CCCCEEEEECCCEEECEEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH DQLHCTNPKPLSHIYLLRHQLIDYVKGRWSDETVTWLTSIVFGDDSMMDEPTEELFQRWS HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCC LSHIIAISGSNITLIITIVFLLLVKGNIVTKERAQTLLILFLPFYGILAGGEPSVWRAVW CCEEEEEECCCEEHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH MITILLIVQKFKKKFLYIDIFSFVFMSLILFDPYVIYELGFQFSFAVTFGILLSAKWITH HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHHHHHHHHHHHHHHC STSTLWNIVQISFVSQMAILPLQLHYFYIFQPLSILLNVIIIPYFTFLVIPFMYIATLFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFPKHLLLILDNSFQWIHSIVVAFLVWVDTYLSFPLLMSGLSIAAVFAYYIFFFRFMYEL HHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELKRMKMAFLSGVLFCLPVIIGALKPYVSDEGIVTMFDIGQGDAILIETPYRQDTILLDA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEC GSTFDFESMEANRGVYKQILRPYFYSRGITHLDAIILTHEDLDHIGSLEYILEEVTVDTI CCCCCCHHCCCCCHHHHHHHHHHHHHCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHH LVSSFFDDQIINDIQSLFPKQIIKRIEAGQIIKADFTNFYVLSPTSDHQTVNDNSLVMYA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCEEEEE DLGGKWLFTGDIGSGVEKSLLNNHPEMNIDILKIAHHGSDTSSDSEFIEKIDPDFGLISV ECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCEEEE GRNNRYGHPAVEVIETMESKSIDILRTDMHGAIQYFFSNNQGTFLIHLP CCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHEEEEEECCCCEEEEECC >Mature Secondary Structure MKGYWYYAAITTGAAILFVITRAEWLPLLIILWLIWLKTRKGLPTLPFIISIISFCFFIF CCCEEEEEEHHHCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH YIPEVEEGVEKEDFQHQSSPLTGSINGSVVITEDYMQFQLDGSQSESNVNFLVMYFFDQS CCCCHHCCCCHHHHHHCCCCCCCCCCCCEEEEECCEEEEECCCCCCCCCCEEEEEEECCC PRSQALFVKNNELLHGATCTIYTSHESIEKPPSSTNPAQFNYQQFLLQKDIHYQIIMEDV CCCCEEEEECCCEEECEEEEEEECCHHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH DQLHCTNPKPLSHIYLLRHQLIDYVKGRWSDETVTWLTSIVFGDDSMMDEPTEELFQRWS HHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHCC LSHIIAISGSNITLIITIVFLLLVKGNIVTKERAQTLLILFLPFYGILAGGEPSVWRAVW CCEEEEEECCCEEHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH MITILLIVQKFKKKFLYIDIFSFVFMSLILFDPYVIYELGFQFSFAVTFGILLSAKWITH HHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHEEHHCCCHHHHHHHHHHHHHHHHHC STSTLWNIVQISFVSQMAILPLQLHYFYIFQPLSILLNVIIIPYFTFLVIPFMYIATLFS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FFPKHLLLILDNSFQWIHSIVVAFLVWVDTYLSFPLLMSGLSIAAVFAYYIFFFRFMYEL HHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ELKRMKMAFLSGVLFCLPVIIGALKPYVSDEGIVTMFDIGQGDAILIETPYRQDTILLDA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEC GSTFDFESMEANRGVYKQILRPYFYSRGITHLDAIILTHEDLDHIGSLEYILEEVTVDTI CCCCCCHHCCCCCHHHHHHHHHHHHHCCCHHHHEEEEECCCHHHHHHHHHHHHHHHHHHH LVSSFFDDQIINDIQSLFPKQIIKRIEAGQIIKADFTNFYVLSPTSDHQTVNDNSLVMYA HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCEEEEE DLGGKWLFTGDIGSGVEKSLLNNHPEMNIDILKIAHHGSDTSSDSEFIEKIDPDFGLISV ECCCEEEEECCCCCCHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHCCCCCCEEEE GRNNRYGHPAVEVIETMESKSIDILRTDMHGAIQYFFSNNQGTFLIHLP CCCCCCCCHHHHHHHHHHCCCCEEEEHHHHHHEEEEEECCCCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]