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The map label for this gene is sodA [H]

Identifier: 23099387

GI number: 23099387

Start: 1958591

End: 1959202

Strand: Reverse

Name: sodA [H]

Synonym: OB1932

Alternate gene names: 23099387

Gene position: 1959202-1958591 (Counterclockwise)

Preceding gene: 23099388

Following gene: 23099386

Centisome position: 53.96

GC content: 37.09

Gene sequence:

>612_bases
ATGGCAAAATTTGAATTACCGGAATTACCATATGCATATGATGCATTGGAACCGACAATTGACAAAGAAACAATGAACAT
TCATCATACGAAACATCACAACACGTATGTAACTAAATTAAATGATGCATTGGAAGGACATGCAGACCTTCAAAGTAAGT
CTGTAGAAGAATTAATTAGTAATCTTGATGCAGTCCCTGAAAATGCAAAAACTGCAGTACGTAACAATGGTGGCGGACAT
GCTAACCATAGCCTATTTTGGAAGTTATTATCACCAAATGGCGGCGGTGAGCCAACAGGTGAATTAGCTGATAAAATTAA
TGCTAAATTTGGTTCATTAGACAAATTCAAAGAAGAATTTGCAGCAGCTGCAGCAGGACGTTTCGGTTCTGGATGGGCTT
GGCTAATTGTTAACAATGGTGAACTAGAAATTACAAGCACACCAAACCAAGATTCACCATTAATGGAAGGAAAAACTCCT
GTATTAGGACTTGATGTTTGGGAACACGCTTATTATCTTAAATATCAAAACAAACGCCCAGAGTACATTTCAGCATTCTG
GAATGTAGTTAATTGGGATCAAGTTGCAAAAAACTACGAAGAAGCTAAGTAA

Upstream 100 bases:

>100_bases
ATAAAGCATATCGTTTGCAACTACTTAAAAGCTTTGATAGTCTTTTTAATATAAAGGGACATAAACCTTTACATCATTTA
TTTTAAGGAGGAAGATAAAC

Downstream 100 bases:

>100_bases
TATAATTATAGATTAAAACACGTGAAAAGATTTTCACGTGTTTTTTTTGTATAGATACGACTCCTTCGCAAAAAATAAAG
TTGGAAAAGAAGGAGTCGTT

Product: manganese superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNDALEGHADLQSKSVEELISNLDAVPENAKTAVRNNGGGH
ANHSLFWKLLSPNGGGEPTGELADKINAKFGSLDKFKEEFAAAAAGRFGSGWAWLIVNNGELEITSTPNQDSPLMEGKTP
VLGLDVWEHAYYLKYQNKRPEYISAFWNVVNWDQVAKNYEEAK

Sequences:

>Translated_203_residues
MAKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNDALEGHADLQSKSVEELISNLDAVPENAKTAVRNNGGGH
ANHSLFWKLLSPNGGGEPTGELADKINAKFGSLDKFKEEFAAAAAGRFGSGWAWLIVNNGELEITSTPNQDSPLMEGKTP
VLGLDVWEHAYYLKYQNKRPEYISAFWNVVNWDQVAKNYEEAK
>Mature_202_residues
AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNDALEGHADLQSKSVEELISNLDAVPENAKTAVRNNGGGHA
NHSLFWKLLSPNGGGEPTGELADKINAKFGSLDKFKEEFAAAAAGRFGSGWAWLIVNNGELEITSTPNQDSPLMEGKTPV
LGLDVWEHAYYLKYQNKRPEYISAFWNVVNWDQVAKNYEEAK

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=206, Percent_Identity=50, Blast_Score=203, Evalue=8e-53,
Organism=Homo sapiens, GI67782305, Length=206, Percent_Identity=50, Blast_Score=203, Evalue=8e-53,
Organism=Homo sapiens, GI67782309, Length=205, Percent_Identity=40, Blast_Score=146, Evalue=1e-35,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=57.2815533980583, Blast_Score=241, Evalue=2e-65,
Organism=Escherichia coli, GI1787946, Length=197, Percent_Identity=50.253807106599, Blast_Score=197, Evalue=3e-52,
Organism=Caenorhabditis elegans, GI17506561, Length=207, Percent_Identity=42.512077294686, Blast_Score=168, Evalue=1e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=205, Percent_Identity=41.4634146341463, Blast_Score=167, Evalue=5e-42,
Organism=Saccharomyces cerevisiae, GI6321796, Length=216, Percent_Identity=41.2037037037037, Blast_Score=156, Evalue=2e-39,
Organism=Drosophila melanogaster, GI17136812, Length=205, Percent_Identity=45.3658536585366, Blast_Score=180, Evalue=6e-46,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22672; Mature: 22541

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNDALEGHADLQSKSVEELIS
CCCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCEEEEEHHHHHCCCHHHHHHHHHHHHH
NLDAVPENAKTAVRNNGGGHANHSLFWKLLSPNGGGEPTGELADKINAKFGSLDKFKEEF
HHHCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
AAAAAGRFGSGWAWLIVNNGELEITSTPNQDSPLMEGKTPVLGLDVWEHAYYLKYQNKRP
HHHHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCC
EYISAFWNVVNWDQVAKNYEEAK
HHHHHHHHHCCHHHHHHHHHCCC
>Mature Secondary Structure 
AKFELPELPYAYDALEPTIDKETMNIHHTKHHNTYVTKLNDALEGHADLQSKSVEELIS
CCCCCCCCCCHHHCCCCCCCCCCCEEEECCCCCEEEEEHHHHHCCCHHHHHHHHHHHHH
NLDAVPENAKTAVRNNGGGHANHSLFWKLLSPNGGGEPTGELADKINAKFGSLDKFKEEF
HHHCCCCCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
AAAAAGRFGSGWAWLIVNNGELEITSTPNQDSPLMEGKTPVLGLDVWEHAYYLKYQNKRP
HHHHCCCCCCCEEEEEEECCEEEEECCCCCCCCCCCCCCCEEEEHHHHHEEEEEECCCCC
EYISAFWNVVNWDQVAKNYEEAK
HHHHHHHHHCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]