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The map label for this gene is yqxC [H]

Identifier: 23099331

GI number: 23099331

Start: 1910805

End: 1911614

Strand: Reverse

Name: yqxC [H]

Synonym: OB1876

Alternate gene names: 23099331

Gene position: 1911614-1910805 (Counterclockwise)

Preceding gene: 23099332

Following gene: 23099330

Centisome position: 52.65

GC content: 35.93

Gene sequence:

>810_bases
ATGAAAAAGAAAAAAAGAGCTGATGAGTTACTTGTAGAGCGAGAATTGGTTGAGAATATTGATAAAGCCAGAAGGTCTAT
AATGGCCGGGATCGTTTTTACAGAAAATGATCGAATAGATAAACCAGGAACCATTATTTCTGTTGAAACGCCGTTACGTG
TAAAACAAAAAGATAATCCTTATGTAGGTAGAGGCGGAAAAAAGCTAGAAAAGGCATTACAAGAATTTGATGTAGATGTA
AGTGATAAATTGTTTATGGATGTTGGTTCATCAACTGGAGGTTTTACTGATTGCGCGTTACAGCATGGTGCAATTAAAAG
CTATGCAATTGATGTCGGGTACAATCAATTAGACTGGAAGCTTCGGAATGACCATCGTGTTATTGTCATGGAACGGACAA
ACTTCAAGGATGTTACACCTGAATTATTAAACCATGGTCTTCCTAATTTTGTATCTATAGATGTATCTTTTATTTCTTTA
AAACATATCTTCCCAGTTCTTAACAAGATTCTGCAACCTAATAGTGATATAATTGCTCTAATAAAACCACAATTCGAGGC
AAAACGTGAACAAGTAGGGGAAAAAGGAATTATTCGTGATCCAGCAGTCCATCACGAGGTCTTAGATAAAGTGATGATGT
ATGCAAGGGAGAGCGGTTTCTCCTTACTAAACTTAACTTACTCACCTATTACAGGTACGGAAGGAAATATTGAGTTTCTA
GTACATTTGGGTTGGGAAAAAGAAAGTAATACGGAAGCGTTCATATCCTATGATCGAGTTATAGAAGAAGCACATATGAA
TTTGAGTTAA

Upstream 100 bases:

>100_bases
TCTATGTTGAAAAAGCCTACAAAAGTCTACATTTGGCTGGAGCAGAAGATTCTCTGCTCGCTGAATTGACAAAGTATTTC
AGTGAGCGTGATCATTAGAA

Downstream 100 bases:

>100_bases
GGAACTGAGGAGGTATAACCATGAGTAAATTACAACGGCATATTAAAATTAGAGAGCTAATAACCGAAAATATAATTGAG
ACACAAGATGAATTAGTCGA

Product: hemolysin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MKKKKRADELLVERELVENIDKARRSIMAGIVFTENDRIDKPGTIISVETPLRVKQKDNPYVGRGGKKLEKALQEFDVDV
SDKLFMDVGSSTGGFTDCALQHGAIKSYAIDVGYNQLDWKLRNDHRVIVMERTNFKDVTPELLNHGLPNFVSIDVSFISL
KHIFPVLNKILQPNSDIIALIKPQFEAKREQVGEKGIIRDPAVHHEVLDKVMMYARESGFSLLNLTYSPITGTEGNIEFL
VHLGWEKESNTEAFISYDRVIEEAHMNLS

Sequences:

>Translated_269_residues
MKKKKRADELLVERELVENIDKARRSIMAGIVFTENDRIDKPGTIISVETPLRVKQKDNPYVGRGGKKLEKALQEFDVDV
SDKLFMDVGSSTGGFTDCALQHGAIKSYAIDVGYNQLDWKLRNDHRVIVMERTNFKDVTPELLNHGLPNFVSIDVSFISL
KHIFPVLNKILQPNSDIIALIKPQFEAKREQVGEKGIIRDPAVHHEVLDKVMMYARESGFSLLNLTYSPITGTEGNIEFL
VHLGWEKESNTEAFISYDRVIEEAHMNLS
>Mature_269_residues
MKKKKRADELLVERELVENIDKARRSIMAGIVFTENDRIDKPGTIISVETPLRVKQKDNPYVGRGGKKLEKALQEFDVDV
SDKLFMDVGSSTGGFTDCALQHGAIKSYAIDVGYNQLDWKLRNDHRVIVMERTNFKDVTPELLNHGLPNFVSIDVSFISL
KHIFPVLNKILQPNSDIIALIKPQFEAKREQVGEKGIIRDPAVHHEVLDKVMMYARESGFSLLNLTYSPITGTEGNIEFL
VHLGWEKESNTEAFISYDRVIEEAHMNLS

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30539; Mature: 30539

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKKKRADELLVERELVENIDKARRSIMAGIVFTENDRIDKPGTIISVETPLRVKQKDNP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCEEEECCCEEECCCCCC
YVGRGGKKLEKALQEFDVDVSDKLFMDVGSSTGGFTDCALQHGAIKSYAIDVGYNQLDWK
CCCCCHHHHHHHHHHHCCCCCCHHEEECCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEE
LRNDHRVIVMERTNFKDVTPELLNHGLPNFVSIDVSFISLKHIFPVLNKILQPNSDIIAL
ECCCCEEEEEECCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
IKPQFEAKREQVGEKGIIRDPAVHHEVLDKVMMYARESGFSLLNLTYSPITGTEGNIEFL
ECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEE
VHLGWEKESNTEAFISYDRVIEEAHMNLS
EEECCCCCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKKKKRADELLVERELVENIDKARRSIMAGIVFTENDRIDKPGTIISVETPLRVKQKDNP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCCCCEEEECCCEEECCCCCC
YVGRGGKKLEKALQEFDVDVSDKLFMDVGSSTGGFTDCALQHGAIKSYAIDVGYNQLDWK
CCCCCHHHHHHHHHHHCCCCCCHHEEECCCCCCCCHHHHHHCCCCEEEEEECCCCEEEEE
LRNDHRVIVMERTNFKDVTPELLNHGLPNFVSIDVSFISLKHIFPVLNKILQPNSDIIAL
ECCCCEEEEEECCCCCCCCHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCEEEE
IKPQFEAKREQVGEKGIIRDPAVHHEVLDKVMMYARESGFSLLNLTYSPITGTEGNIEFL
ECCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCEEEE
VHLGWEKESNTEAFISYDRVIEEAHMNLS
EEECCCCCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]