Click here to switch to the map view.

The map label for this gene is rimP

Identifier: 23099049

GI number: 23099049

Start: 1633902

End: 1634372

Strand: Direct

Name: rimP

Synonym: OB1594

Alternate gene names: 23099049

Gene position: 1633902-1634372 (Clockwise)

Preceding gene: 23099048

Following gene: 23099050

Centisome position: 45.0

GC content: 33.55

Gene sequence:

>471_bases
ATGAGTTCTCACGTAGTTTCTTTAACAGAAGAGTTGGTTACACCAATTTTAGAAGAAAAGAATCTAGAGTTAGTAGATAT
TGAATATGTAAAAGAAGGCAAGAATTGGTTTCTACGTGTCTATATAGATAAAGAGGGCGGTATTGATATCATGGAGTGCG
GAGAAGTTTCAGAACTTTTAAGCGAAAAGCTTGATGAATCAGATCCAATTACGGAAGCATATTTTTTAGAAGTGTCATCT
CCAGGAGTTGAACGTCCGTTAAAGAAAAAAGAAGATTTTGATGCCAGTATTGGGAAAAATATCTTTGTGAAATTATATGA
ACCTATTGATGGAAGTAAAGAGTATGAAGGTACATTACAATCCTTTGATGGTGAAACTGTAACAATGGAATATAAAGTGA
AAACGCGTAAGAAGCAAGTAGAGATACCTTATAGTAAAATTGCCAAAGCAAGAATTGCTGTTACGTTTTAA

Upstream 100 bases:

>100_bases
ATTTCCATGAAGAGTTTAGCTTCCCCCTAGCCGATACATCTGGCAGGGGTTTTATATTGAATGAATTTAATTTAAGCCGG
AAGATAAGGAGGATGAAAAT

Downstream 100 bases:

>100_bases
TACAAAGGGGGAAAAGAAAAAGTGAGCATGCAGTTATTTGATGCGATTGAGAATTTAGCAAAAGAAAAGGGAATTGATAA
GGATATCTTAATGGAGGCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MSSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKEGGIDIMECGEVSELLSEKLDESDPITEAYFLEVSS
PGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTMEYKVKTRKKQVEIPYSKIAKARIAVTF

Sequences:

>Translated_156_residues
MSSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKEGGIDIMECGEVSELLSEKLDESDPITEAYFLEVSS
PGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTMEYKVKTRKKQVEIPYSKIAKARIAVTF
>Mature_155_residues
SSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKEGGIDIMECGEVSELLSEKLDESDPITEAYFLEVSSP
GVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQSFDGETVTMEYKVKTRKKQVEIPYSKIAKARIAVTF

Specific function: Required for maturation of 30S ribosomal subunits

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family

Homologues:

Organism=Escherichia coli, GI226510978, Length=156, Percent_Identity=37.1794871794872, Blast_Score=99, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMP_OCEIH (Q8EQU5)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692515.1
- ProteinModelPortal:   Q8EQU5
- SMR:   Q8EQU5
- GeneID:   1017982
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1594
- NMPDR:   fig|221109.1.peg.1596
- HOGENOM:   HBG668072
- OMA:   TIENCAA
- BioCyc:   OIHE221109:OB1594-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01077
- InterPro:   IPR003728

Pfam domain/function: PF02576 DUF150

EC number: NA

Molecular weight: Translated: 17793; Mature: 17662

Theoretical pI: Translated: 4.40; Mature: 4.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKEGGIDIMECGEVSELL
CCCCHHHHHHHHHHHHHCCCCCEEEEHHEEECCCCEEEEEEEECCCCCCEEECCCHHHHH
SEKLDESDPITEAYFLEVSSPGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQ
HHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH
SFDGETVTMEYKVKTRKKQVEIPYSKIAKARIAVTF
CCCCCEEEEEEEEECCCEEEECCHHHHCEEEEEEEC
>Mature Secondary Structure 
SSHVVSLTEELVTPILEEKNLELVDIEYVKEGKNWFLRVYIDKEGGIDIMECGEVSELL
CCCHHHHHHHHHHHHHCCCCCEEEEHHEEECCCCEEEEEEEECCCCCCEEECCCHHHHH
SEKLDESDPITEAYFLEVSSPGVERPLKKKEDFDASIGKNIFVKLYEPIDGSKEYEGTLQ
HHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHH
SFDGETVTMEYKVKTRKKQVEIPYSKIAKARIAVTF
CCCCCEEEEEEEEECCCEEEECCHHHHCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376