Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 23099000

GI number: 23099000

Start: 1587761

End: 1588645

Strand: Direct

Name: smf [H]

Synonym: OB1545

Alternate gene names: 23099000

Gene position: 1587761-1588645 (Clockwise)

Preceding gene: 23098999

Following gene: 23099001

Centisome position: 43.73

GC content: 35.03

Gene sequence:

>885_bases
TTGGATTTATTGAAAACAAAAATTGTCCATCTTTCTAGATGTCGTTCTATTACCCGGTCATTACTTCGGAACATTCTTCA
ACTTGATCCTTCATTAAAAATAACCTATCAATCCTCTGCGAATCAACTTTCCTCTTGGTTGCAAATCCCCCTAAAAAAAG
CAGAATATTTTTATTCTGACCTTCATAATGTAGCTTTACAAAAACAAGTAATTAGAGATATGCAACTGTATCAAACTGTA
ACCATAGTTGACGAATATTATCCACCTATGTTAAATACTATTAAGGACGGCCCTATCGTTTTATATGCAATAGGTGATAT
AGATATTTTAAAGAAATTACCTAGTTTAAGTGTAATTGGTACTCGAAAACCTACAGCACAAGCTCAAAGAAAGATGGAAA
TTATTTTACCTCTAATTCAACAAGGGTGGATAATTGTAAGTGGTATGGCAAGAGGGATTGATAGTTTTGCTCATCAGATG
ACATTACATCACAATGGAAAAACAATCGCTGTTTTAGGCGGAGGATTTCATCATATTTATCCAAGAGAACATTTATCGCT
ATTCCATGAAATAACCCAAAAAGGATTAGTACTTACAGAATATCCGCCAGATCAACCACCAATCCGTCATCAATTTCCAG
AGAGGAATCGAATCATTAGTGGATTAACGATGGGAACGCTGGTTATTGAAGCGATGAAGCGAAGTGGTACACTTATTACC
GTAGATCAGGCTCTTGATCAAGGTAGAGAAGTATTTGCGGTACCAGGTAATCCTTGGGTGCAACAAACAAAAGGATGTCA
TCAAATGATACAAGATGGTGCAAAATTAGTTCAAGAAACGAACGATATTATTATAGAATTCGAAGGAATGTTACTTGAAA
ATTAA

Upstream 100 bases:

>100_bases
TTTGTATGAGTTCTTAAATTCCAATCTCTATTTTCCATATAACTTAATTTGTCATTGCTACGTTTAATAAAAAACCGAAT
AAGTTAAAGGAAGTGGTAAC

Downstream 100 bases:

>100_bases
AAAAGTTTTAACAGAAGTGTTTGACAAAATAGAGATCTATATTTAGTATTAGAAAAGATTTCATTACGTAAAATTGTCAA
CCTCATTTTGGGAGGAAGGT

Product: DNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MDLLKTKIVHLSRCRSITRSLLRNILQLDPSLKITYQSSANQLSSWLQIPLKKAEYFYSDLHNVALQKQVIRDMQLYQTV
TIVDEYYPPMLNTIKDGPIVLYAIGDIDILKKLPSLSVIGTRKPTAQAQRKMEIILPLIQQGWIIVSGMARGIDSFAHQM
TLHHNGKTIAVLGGGFHHIYPREHLSLFHEITQKGLVLTEYPPDQPPIRHQFPERNRIISGLTMGTLVIEAMKRSGTLIT
VDQALDQGREVFAVPGNPWVQQTKGCHQMIQDGAKLVQETNDIIIEFEGMLLEN

Sequences:

>Translated_294_residues
MDLLKTKIVHLSRCRSITRSLLRNILQLDPSLKITYQSSANQLSSWLQIPLKKAEYFYSDLHNVALQKQVIRDMQLYQTV
TIVDEYYPPMLNTIKDGPIVLYAIGDIDILKKLPSLSVIGTRKPTAQAQRKMEIILPLIQQGWIIVSGMARGIDSFAHQM
TLHHNGKTIAVLGGGFHHIYPREHLSLFHEITQKGLVLTEYPPDQPPIRHQFPERNRIISGLTMGTLVIEAMKRSGTLIT
VDQALDQGREVFAVPGNPWVQQTKGCHQMIQDGAKLVQETNDIIIEFEGMLLEN
>Mature_294_residues
MDLLKTKIVHLSRCRSITRSLLRNILQLDPSLKITYQSSANQLSSWLQIPLKKAEYFYSDLHNVALQKQVIRDMQLYQTV
TIVDEYYPPMLNTIKDGPIVLYAIGDIDILKKLPSLSVIGTRKPTAQAQRKMEIILPLIQQGWIIVSGMARGIDSFAHQM
TLHHNGKTIAVLGGGFHHIYPREHLSLFHEITQKGLVLTEYPPDQPPIRHQFPERNRIISGLTMGTLVIEAMKRSGTLIT
VDQALDQGREVFAVPGNPWVQQTKGCHQMIQDGAKLVQETNDIIIEFEGMLLEN

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=203, Percent_Identity=43.3497536945813, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 33320; Mature: 33320

Theoretical pI: Translated: 8.96; Mature: 8.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLKTKIVHLSRCRSITRSLLRNILQLDPSLKITYQSSANQLSSWLQIPLKKAEYFYSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LHNVALQKQVIRDMQLYQTVTIVDEYYPPMLNTIKDGPIVLYAIGDIDILKKLPSLSVIG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCHHHHHHCCCCEEEE
TRKPTAQAQRKMEIILPLIQQGWIIVSGMARGIDSFAHQMTLHHNGKTIAVLGGGFHHIY
CCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCC
PREHLSLFHEITQKGLVLTEYPPDQPPIRHQFPERNRIISGLTMGTLVIEAMKRSGTLIT
CHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
VDQALDQGREVFAVPGNPWVQQTKGCHQMIQDGAKLVQETNDIIIEFEGMLLEN
EHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEECC
>Mature Secondary Structure
MDLLKTKIVHLSRCRSITRSLLRNILQLDPSLKITYQSSANQLSSWLQIPLKKAEYFYSD
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHH
LHNVALQKQVIRDMQLYQTVTIVDEYYPPMLNTIKDGPIVLYAIGDIDILKKLPSLSVIG
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCEEEEEECCHHHHHHCCCCEEEE
TRKPTAQAQRKMEIILPLIQQGWIIVSGMARGIDSFAHQMTLHHNGKTIAVLGGGFHHIY
CCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHEEEECCCEEEEECCCCCCCC
PREHLSLFHEITQKGLVLTEYPPDQPPIRHQFPERNRIISGLTMGTLVIEAMKRSGTLIT
CHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEE
VDQALDQGREVFAVPGNPWVQQTKGCHQMIQDGAKLVQETNDIIIEFEGMLLEN
EHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]