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The map label for this gene is rimM

Identifier: 23098990

GI number: 23098990

Start: 1578760

End: 1579272

Strand: Direct

Name: rimM

Synonym: OB1535

Alternate gene names: 23098990

Gene position: 1578760-1579272 (Clockwise)

Preceding gene: 23098989

Following gene: 23098991

Centisome position: 43.49

GC content: 33.72

Gene sequence:

>513_bases
ATGAGTGGAGTTAAGTTTAATATAGGAAAGATTGTAAATACTCACGGCATACGTGGTGAAGTTAAAGTAGTTCGTATTAC
TGATTTTGAAGATCGATTTGATCCTGGTAATACAGTGTATTTACAAGATAATAAGGAATATAAGCCGTTAGTAATTGCTA
CACATCGAGTCCATAAAGGATTTGACCTTCTACAGTTTAAAGGATATGGAAATATTAATGAGGTTGAAGCTTTTAAGGGA
TTGATGTTATCTATTGATGAAGATCAACTAACTGATTTGGAAGAAGATGCGTACTACTATCATGAAATAGTAGGTTGCAA
AGTAGTTACAAGTGAAGGGGAGGAATTAGGTAAGGTAAAAGAAATTCTCTCCCCTGGAGCAAATGATGTATGGGTTGTAC
AACGTATGAATGCGAAAGATTTGTTAATCCCATATATTGAGCAGGTTGTGAAACAAGTAGATATTGAAAACAAAATAATC
AAGGTTCAATTAATGGAAGGGATGCTTGATTAA

Upstream 100 bases:

>100_bases
TCAAAGTTGGCACAAATTGGGGTAAACTAATGAAGGACAAGCAATTATTATTAAAGACGATCAGGTTATACGTATTGATG
AATAAAGCAGGTGATTTGAA

Downstream 100 bases:

>100_bases
TGCATATCGATATATTGACATTGTTTCCAGAAATGTTTCACGGAGTATTTCAGTCCTCAATTTTGAATAAAGCGGTAGAA
CGACAACAATTTACTTACGA

Product: 16S rRNA processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSGVKFNIGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKGFDLLQFKGYGNINEVEAFKG
LMLSIDEDQLTDLEEDAYYYHEIVGCKVVTSEGEELGKVKEILSPGANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKII
KVQLMEGMLD

Sequences:

>Translated_170_residues
MSGVKFNIGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKGFDLLQFKGYGNINEVEAFKG
LMLSIDEDQLTDLEEDAYYYHEIVGCKVVTSEGEELGKVKEILSPGANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKII
KVQLMEGMLD
>Mature_169_residues
SGVKFNIGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKGFDLLQFKGYGNINEVEAFKGL
MLSIDEDQLTDLEEDAYYYHEIVGCKVVTSEGEELGKVKEILSPGANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKIIK
VQLMEGMLD

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=31.3609467455621, Blast_Score=86, Evalue=9e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_OCEIH (Q8EQZ8)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692456.1
- ProteinModelPortal:   Q8EQZ8
- SMR:   Q8EQZ8
- GeneID:   1017815
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1535
- NMPDR:   fig|221109.1.peg.1537
- HOGENOM:   HBG703775
- OMA:   NLVPFFI
- BioCyc:   OIHE221109:OB1535-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19376; Mature: 19244

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGVKFNIGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKG
CCCCEEECCEEEECCCCCCEEEEEEEECCHHHCCCCCEEEEECCCCCCCEEEEEECCCCC
FDLLQFKGYGNINEVEAFKGLMLSIDEDQLTDLEEDAYYYHEIVGCKVVTSEGEELGKVK
CEEEEECCCCCCHHHHHHCCEEEEECCHHHCCCHHHHHHHHHHHCEEEEECCCHHHHHHH
EILSPGANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKIIKVQLMEGMLD
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
>Mature Secondary Structure 
SGVKFNIGKIVNTHGIRGEVKVVRITDFEDRFDPGNTVYLQDNKEYKPLVIATHRVHKG
CCCEEECCEEEECCCCCCEEEEEEEECCHHHCCCCCEEEEECCCCCCCEEEEEECCCCC
FDLLQFKGYGNINEVEAFKGLMLSIDEDQLTDLEEDAYYYHEIVGCKVVTSEGEELGKVK
CEEEEECCCCCCHHHHHHCCEEEEECCHHHCCCHHHHHHHHHHHCEEEEECCCHHHHHHH
EILSPGANDVWVVQRMNAKDLLIPYIEQVVKQVDIENKIIKVQLMEGMLD
HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376