Click here to switch to the map view.

The map label for this gene is 23098985

Identifier: 23098985

GI number: 23098985

Start: 1575802

End: 1576119

Strand: Direct

Name: 23098985

Synonym: OB1530

Alternate gene names: NA

Gene position: 1575802-1576119 (Clockwise)

Preceding gene: 23098984

Following gene: 23098986

Centisome position: 43.4

GC content: 28.62

Gene sequence:

>318_bases
TTGTTAGATAAAACGACGCGTATTAACTATTTATTTGATTTTTATCAAGAACTATTAACACCAAAGCAACGAAATTATAT
GGAAATGTATTATTTAGAGGATTATTCCTTAGGAGAAATTTCCGAGTTGTTTCAAGTATCAAGACAAGCAGTTTATGATA
ATATAAAGCGAACAGAAGCAATGCTTGAATCATATGAAGAGAAACTTCATTTATATTCAAAGTTTGAACAACGTGTTAAG
CTGTTAGAGAAGTTGAAATTAATGACAACAGATAAGCATGTACATGAACATATTCAAAAACTAAAAGACTTAGATTAG

Upstream 100 bases:

>100_bases
TTGAAGCAAAAGAAGATTAATCTACTATTTCCTTGACAATAAAACATGCTGTTCGCTATGATGTTCGTAAAGGAAAATCA
CTTAACAAGAGGTGTTTCCA

Downstream 100 bases:

>100_bases
GGGGACACCTTCTATGGCGTTTGAAGGATTGGCTGACCGCCTGCAGAGCACGATTAAGAAGATAACAGGTAAAGGCAAAG
TATCTGAGCAAGATGTAAAA

Product: putative DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 105

Protein sequence:

>105_residues
MLDKTTRINYLFDFYQELLTPKQRNYMEMYYLEDYSLGEISELFQVSRQAVYDNIKRTEAMLESYEEKLHLYSKFEQRVK
LLEKLKLMTTDKHVHEHIQKLKDLD

Sequences:

>Translated_105_residues
MLDKTTRINYLFDFYQELLTPKQRNYMEMYYLEDYSLGEISELFQVSRQAVYDNIKRTEAMLESYEEKLHLYSKFEQRVK
LLEKLKLMTTDKHVHEHIQKLKDLD
>Mature_105_residues
MLDKTTRINYLFDFYQELLTPKQRNYMEMYYLEDYSLGEISELFQVSRQAVYDNIKRTEAMLESYEEKLHLYSKFEQRVK
LLEKLKLMTTDKHVHEHIQKLKDLD

Specific function: Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein

COG id: COG2739

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0122 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1530_OCEIH (Q8ER03)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692451.1
- ProteinModelPortal:   Q8ER03
- SMR:   Q8ER03
- GeneID:   1017808
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1530
- NMPDR:   fig|221109.1.peg.1532
- HOGENOM:   HBG427419
- OMA:   KSYMSLY
- ProtClustDB:   PRK00118
- BioCyc:   OIHE221109:OB1530-MONOMER
- HAMAP:   MF_00245
- InterPro:   IPR013324
- InterPro:   IPR007394
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10

Pfam domain/function: PF04297 UPF0122; SSF88659 Sigma_r3_r4

EC number: NA

Molecular weight: Translated: 12935; Mature: 12935

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKTTRINYLFDFYQELLTPKQRNYMEMYYLEDYSLGEISELFQVSRQAVYDNIKRTEA
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MLESYEEKLHLYSKFEQRVKLLEKLKLMTTDKHVHEHIQKLKDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLDKTTRINYLFDFYQELLTPKQRNYMEMYYLEDYSLGEISELFQVSRQAVYDNIKRTEA
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
MLESYEEKLHLYSKFEQRVKLLEKLKLMTTDKHVHEHIQKLKDLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376