Click here to switch to the map view.

The map label for this gene is rpoZ

Identifier: 23098958

GI number: 23098958

Start: 1545772

End: 1545966

Strand: Direct

Name: rpoZ

Synonym: OB1503

Alternate gene names: 23098958

Gene position: 1545772-1545966 (Clockwise)

Preceding gene: 23098957

Following gene: 23098959

Centisome position: 42.58

GC content: 32.31

Gene sequence:

>195_bases
ATGATGTTAGAACCTTCTATTGACTCTTTACAAAAACGAATTAAATCTAAATACAGTCTAGTAACATTATCTGCAAGAAG
AGCAAGACAACTGAGTGAGACAAATCAACCATTAGTTGAAAAGTCTAAATCTCATAAGTTTGTCGGTATGGCTCTTGAAG
AGATTGAAGCAGGCAAACTATATATTGAGAATTAA

Upstream 100 bases:

>100_bases
AGCATGCGGTAGATAAAGTAAAAACAATAATCAAAAGTGAGCATTTGAAACGAGAGCGAATTGCAAAACAATATAAAAAG
ATACTGGAGGATGGGTTATC

Downstream 100 bases:

>100_bases
GATGGACCCTCTGCCATAATGCGGAGGGTTTTTCATTGTTGTTTATTAAATGATAAAGTAACGGAATAACTGTAATAGTC
AGGTTCCTGTTCTAAGTATC

Product: DNA-directed RNA polymerase omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 64; Mature: 64

Protein sequence:

>64_residues
MMLEPSIDSLQKRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKLYIEN

Sequences:

>Translated_64_residues
MMLEPSIDSLQKRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKLYIEN
>Mature_64_residues
MMLEPSIDSLQKRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKLYIEN

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_OCEIH (Q8ER27)

Other databases:

- EMBL:   BA000028
- RefSeq:   NP_692424.1
- GeneID:   1017764
- GenomeReviews:   BA000028_GR
- KEGG:   oih:OB1503
- NMPDR:   fig|221109.1.peg.1505
- HOGENOM:   HBG742204
- OMA:   SKYKLVT
- BioCyc:   OIHE221109:OB1503-MONOMER
- BRENDA:   2.7.7.6
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7323; Mature: 7323

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLEPSIDSLQKRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKL
CCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCCEE
YIEN
EECC
>Mature Secondary Structure
MMLEPSIDSLQKRIKSKYSLVTLSARRARQLSETNQPLVEKSKSHKFVGMALEEIEAGKL
CCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHCCCCEE
YIEN
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12235376