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The map label for this gene is yciR [C]

Identifier: 23098814

GI number: 23098814

Start: 1405931

End: 1407550

Strand: Reverse

Name: yciR [C]

Synonym: OB1359

Alternate gene names: 23098814

Gene position: 1407550-1405931 (Counterclockwise)

Preceding gene: 23098815

Following gene: 23098812

Centisome position: 38.77

GC content: 33.46

Gene sequence:

>1620_bases
ATGTTTTCCATCATAGATGTGAATGGGAATTTAATATATGCGAATGATTCTTTCTGCAAGCGTCTAAATTACACCGAAGA
AGACATATTTGGCAAACCGTTTAATAGAATACTAAAGTCACCTTTCCCCCTACATATCGTAAGAGAACAAAATAAAAAAG
CTGTTTGGAAAGAGGAAATTCAAATCCAAACAAAAGATGATACCACTTGTTGGTTTGAAGCATCGATGGTACCTTATTAT
GATCAAGATGGAAATCCAGATAAAACGATAACAACTTACTATGATATTACTGCAAGAAAACATTATGAAGAGTATATCGA
AGGAATTGCATTTACGGATTATTTAACGAAGTTACCGAATCAGAATCAACTTTATCATTGGATAGACGAACAACAAATAG
ATATCAATAATACAAAGGCCATATTATATATTTCTTTAGATCGATTCAAACAAATTAATGAAGCTTTCGGTAAACGTATT
GCAGATAAAGTTATTAGAATGGTAGCAGAACGATTGCAAAACTTCCAAACGAAAGATAACTTTCTGTTTCGTAAAGATGG
AGATGAATTTGTTGTTATTATAAAAGAACAATTAAATCAAGAGGAATGTATGGCGAAAGCAGAAAGTATCGTAAATAAGT
TGCGCATCCCATATAAAATACAAGATAGCCAAATTTCAATAACGGTTAGCATCGGAATTCGTTTTCCTTACAAATCCGCC
TATACGAATGGGCACTCTAAGTATGATGAAATAGATACTTCCATTAAACAAGCAAGAAAAGCAATGGATCTTGCTAAAAA
GAAAGGTGGAAACCGATATTGTATACATGCTCATCATCAGGAAAAACCTCTGGAACGGGGCTATATAATAGATTTAGAAT
TAAAGGAAGCCCTAGCTCGCGAAGAGTTCAGCATTATGTACCAACCAATTATTAATCTTAAAAGTCATAAAGTAGTTGGT
GCAGAAGCGTTACTACGATGGAATAACCGAGAGCTTGGTTTTGTTTCTCCTGATGAATTCATACCCAAATTAGAGGAATC
TGGAATGATTATCTCTGTCGGAAAGTGGATATTAGAAAATGTCTGTAGAAGGATGAAATCATGGCAGGAAAAAGGCTTAC
TCATGCAACGTATTTCCGTAAATGTTTCTCCAATACAATTTAAAGATAAGTACTTTGTACAAGACGTGAAAGAAATACTC
AATGATACAATGCTAGATGCCTCATATCTTGAGATTGAAATAACTGAAAGTACGATTCTTAATCTAGAAAGTTCGATGTT
GACCATTTTAGAATTAAAGAGCTTAGGAATGCATGTGTCTATTGATGATTTTGGGACAGGTTATTCATCGTTAAGCTATC
TAAAACAACTTCCTATCGATACATTAAAAATTGATAAGTCATTTATCGATGATCTTGATCGAGATGGAGAAATTATTACA
AATACAATCATTAATATGGGGAAAAATTTGCACTTCCGTATTATTGCTGAAGGAATTGAAAGTGAAAAACAGCTCGAATA
CTTGAAAAGTCAGCAATGCCACGAAGGACAAGGATATCTCTTTAGTAAACCTGTTCAACCCAATGAAATTATGACAATGT
TACTACAGCAACCATCATAA

Upstream 100 bases:

>100_bases
TAGAGTGTACATATACATAAGCGAGGTATTCTTCATGAATGAAAAAAGAAAACATTATTTAACTGATAGTAGGGTACAAT
CCGCAATAAATCAGACAACT

Downstream 100 bases:

>100_bases
AAATACACGCTATAAACAATATTCCCAAATAAAAAGACGCTTAGTTCAATTACTGTTAAGCGTCTTTTTCACTACTATTT
ATTATTATTGGAAGAAGATT

Product: truncated nitrogen fixation positive activator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MFSIIDVNGNLIYANDSFCKRLNYTEEDIFGKPFNRILKSPFPLHIVREQNKKAVWKEEIQIQTKDDTTCWFEASMVPYY
DQDGNPDKTITTYYDITARKHYEEYIEGIAFTDYLTKLPNQNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRI
ADKVIRMVAERLQNFQTKDNFLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVSIGIRFPYKSA
YTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYIIDLELKEALAREEFSIMYQPIINLKSHKVVG
AEALLRWNNRELGFVSPDEFIPKLEESGMIISVGKWILENVCRRMKSWQEKGLLMQRISVNVSPIQFKDKYFVQDVKEIL
NDTMLDASYLEIEITESTILNLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSFIDDLDRDGEIIT
NTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPNEIMTMLLQQPS

Sequences:

>Translated_539_residues
MFSIIDVNGNLIYANDSFCKRLNYTEEDIFGKPFNRILKSPFPLHIVREQNKKAVWKEEIQIQTKDDTTCWFEASMVPYY
DQDGNPDKTITTYYDITARKHYEEYIEGIAFTDYLTKLPNQNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRI
ADKVIRMVAERLQNFQTKDNFLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVSIGIRFPYKSA
YTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYIIDLELKEALAREEFSIMYQPIINLKSHKVVG
AEALLRWNNRELGFVSPDEFIPKLEESGMIISVGKWILENVCRRMKSWQEKGLLMQRISVNVSPIQFKDKYFVQDVKEIL
NDTMLDASYLEIEITESTILNLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSFIDDLDRDGEIIT
NTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPNEIMTMLLQQPS
>Mature_539_residues
MFSIIDVNGNLIYANDSFCKRLNYTEEDIFGKPFNRILKSPFPLHIVREQNKKAVWKEEIQIQTKDDTTCWFEASMVPYY
DQDGNPDKTITTYYDITARKHYEEYIEGIAFTDYLTKLPNQNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRI
ADKVIRMVAERLQNFQTKDNFLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVSIGIRFPYKSA
YTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYIIDLELKEALAREEFSIMYQPIINLKSHKVVG
AEALLRWNNRELGFVSPDEFIPKLEESGMIISVGKWILENVCRRMKSWQEKGLLMQRISVNVSPIQFKDKYFVQDVKEIL
NDTMLDASYLEIEITESTILNLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSFIDDLDRDGEIIT
NTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPNEIMTMLLQQPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=534, Percent_Identity=30.1498127340824, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=30.2752293577982, Blast_Score=232, Evalue=5e-62,
Organism=Escherichia coli, GI226510982, Length=436, Percent_Identity=28.6697247706422, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI87081743, Length=237, Percent_Identity=37.9746835443038, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=33.3333333333333, Blast_Score=157, Evalue=1e-39,
Organism=Escherichia coli, GI87081980, Length=238, Percent_Identity=34.8739495798319, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081845, Length=248, Percent_Identity=33.4677419354839, Blast_Score=144, Evalue=2e-35,
Organism=Escherichia coli, GI1788502, Length=237, Percent_Identity=30.8016877637131, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1787055, Length=398, Percent_Identity=26.3819095477387, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=242, Percent_Identity=30.9917355371901, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788849, Length=239, Percent_Identity=33.4728033472803, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI87082096, Length=433, Percent_Identity=23.7875288683603, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=188, Percent_Identity=30.8510638297872, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693134, Length=179, Percent_Identity=29.0502793296089, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787816, Length=196, Percent_Identity=28.0612244897959, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 62775; Mature: 62775

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSIIDVNGNLIYANDSFCKRLNYTEEDIFGKPFNRILKSPFPLHIVREQNKKAVWKEEI
CEEEEEECCCEEEECHHHHHHCCCCHHHHCCCCHHHHHCCCCCEEEEECCCCCCCEEEHE
QIQTKDDTTCWFEASMVPYYDQDGNPDKTITTYYDITARKHYEEYIEGIAFTDYLTKLPN
EEEECCCCEEEEEECCCCEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
QNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRIADKVIRMVAERLQNFQTKDN
CCCEEEECCCCEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVSIGIRFPYKSA
EEEEECCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEEEECCCHHH
YTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYIIDLELKEALAR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHH
EEFSIMYQPIINLKSHKVVGAEALLRWNNRELGFVSPDEFIPKLEESGMIISVGKWILEN
HHHHHHHHHHHCCCCCEEECHHHHHEECCCCCCCCCCHHHHCCHHHCCCEEEHHHHHHHH
VCRRMKSWQEKGLLMQRISVNVSPIQFKDKYFVQDVKEILNDTMLDASYLEIEITESTIL
HHHHHHHHHHHCCEEHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH
NLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSFIDDLDRDGEIIT
HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCHHHH
NTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPNEIMTMLLQQPS
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MFSIIDVNGNLIYANDSFCKRLNYTEEDIFGKPFNRILKSPFPLHIVREQNKKAVWKEEI
CEEEEEECCCEEEECHHHHHHCCCCHHHHCCCCHHHHHCCCCCEEEEECCCCCCCEEEHE
QIQTKDDTTCWFEASMVPYYDQDGNPDKTITTYYDITARKHYEEYIEGIAFTDYLTKLPN
EEEECCCCEEEEEECCCCEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCC
QNQLYHWIDEQQIDINNTKAILYISLDRFKQINEAFGKRIADKVIRMVAERLQNFQTKDN
CCCEEEECCCCEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
FLFRKDGDEFVVIIKEQLNQEECMAKAESIVNKLRIPYKIQDSQISITVSIGIRFPYKSA
EEEEECCCCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECCEEEEEEEEEEECCCHHH
YTNGHSKYDEIDTSIKQARKAMDLAKKKGGNRYCIHAHHQEKPLERGYIIDLELKEALAR
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEEEHHHHHHHH
EEFSIMYQPIINLKSHKVVGAEALLRWNNRELGFVSPDEFIPKLEESGMIISVGKWILEN
HHHHHHHHHHHCCCCCEEECHHHHHEECCCCCCCCCCHHHHCCHHHCCCEEEHHHHHHHH
VCRRMKSWQEKGLLMQRISVNVSPIQFKDKYFVQDVKEILNDTMLDASYLEIEITESTIL
HHHHHHHHHHHCCEEHHHCCCCCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHH
NLESSMLTILELKSLGMHVSIDDFGTGYSSLSYLKQLPIDTLKIDKSFIDDLDRDGEIIT
HHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCHHHH
NTIINMGKNLHFRIIAEGIESEKQLEYLKSQQCHEGQGYLFSKPVQPNEIMTMLLQQPS
HHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCEEECCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]