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The map label for this gene is sigM [H]

Identifier: 23098753

GI number: 23098753

Start: 1339487

End: 1340014

Strand: Reverse

Name: sigM [H]

Synonym: OB1298

Alternate gene names: 23098753

Gene position: 1340014-1339487 (Counterclockwise)

Preceding gene: 23098763

Following gene: 23098752

Centisome position: 36.91

GC content: 34.66

Gene sequence:

>528_bases
ATGAAGAAAAACCAATTAGAAGAAATCTATATTAAATTTGCCCCCTCTGTTTTCCAATATGCTTATCAACTTTCAAAATC
AAAACAAGTCGCTGAAGACCTTACTCAAGAGACATTTCTTCAAGCAACTATTCACCTCCACACATTTAAAGATGAAAGTG
TTCGAAGTTGGCTGTTTCGCGTTACTCGAAACGCCTATATTGATGAATGGAGAAAAAAAGTTAAAAGGCAGCATATTTGG
TTTCATAAGCTACTACCACAAAAAGAAATATTAAGCCCATACGGACTCCCCGAACAAGAATTATTAGGAAAAGAAATTTC
TCAGAATATTACACAGCTACTGCAGTTTCTCCCGGAAAATTACCGTACTGTGATCTATTTACGAGAATTTGAAGAATTTT
CTTATCACGAAATTATGCAAACGACAGAGTTAAGTGAAAACCAAGTCAAGGTAACCCTGTTTCGTGCAAGAAAGAGATTA
CAACAATTAGTAATCAAGAAAGGATGGTACAATGAAAGAATGGAATAA

Upstream 100 bases:

>100_bases
TTGACTCTATCATAATTAAATCAAATAATTGAAAAATCACTGTAACATTGACTTATTCATATACGTTATTAGCAATGACT
TTATATACGGAGAGGAGTTA

Downstream 100 bases:

>100_bases
AGATATGGAAAAGAAGATTTTAAAAAAATACCGCTTCACACTTCAATTTCGGGTATTACGTATTATATTAGCTGTAATTT
TCATTTATATATTGTATATG

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MKKNQLEEIYIKFAPSVFQYAYQLSKSKQVAEDLTQETFLQATIHLHTFKDESVRSWLFRVTRNAYIDEWRKKVKRQHIW
FHKLLPQKEILSPYGLPEQELLGKEISQNITQLLQFLPENYRTVIYLREFEEFSYHEIMQTTELSENQVKVTLFRARKRL
QQLVIKKGWYNERME

Sequences:

>Translated_175_residues
MKKNQLEEIYIKFAPSVFQYAYQLSKSKQVAEDLTQETFLQATIHLHTFKDESVRSWLFRVTRNAYIDEWRKKVKRQHIW
FHKLLPQKEILSPYGLPEQELLGKEISQNITQLLQFLPENYRTVIYLREFEEFSYHEIMQTTELSENQVKVTLFRARKRL
QQLVIKKGWYNERME
>Mature_175_residues
MKKNQLEEIYIKFAPSVFQYAYQLSKSKQVAEDLTQETFLQATIHLHTFKDESVRSWLFRVTRNAYIDEWRKKVKRQHIW
FHKLLPQKEILSPYGLPEQELLGKEISQNITQLLQFLPENYRTVIYLREFEEFSYHEIMQTTELSENQVKVTLFRARKRL
QQLVIKKGWYNERME

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21363; Mature: 21363

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNQLEEIYIKFAPSVFQYAYQLSKSKQVAEDLTQETFLQATIHLHTFKDESVRSWLFR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHH
VTRNAYIDEWRKKVKRQHIWFHKLLPQKEILSPYGLPEQELLGKEISQNITQLLQFLPEN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YRTVIYLREFEEFSYHEIMQTTELSENQVKVTLFRARKRLQQLVIKKGWYNERME
CCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKKNQLEEIYIKFAPSVFQYAYQLSKSKQVAEDLTQETFLQATIHLHTFKDESVRSWLFR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHH
VTRNAYIDEWRKKVKRQHIWFHKLLPQKEILSPYGLPEQELLGKEISQNITQLLQFLPEN
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
YRTVIYLREFEEFSYHEIMQTTELSENQVKVTLFRARKRLQQLVIKKGWYNERME
CCEEEEEHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]