Definition Oceanobacillus iheyensis HTE831, complete genome.
Accession NC_004193
Length 3,630,528

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The map label for this gene is yhdH [H]

Identifier: 23098315

GI number: 23098315

Start: 911366

End: 912709

Strand: Reverse

Name: yhdH [H]

Synonym: OB0860

Alternate gene names: 23098315

Gene position: 912709-911366 (Counterclockwise)

Preceding gene: 23098319

Following gene: 23098314

Centisome position: 25.14

GC content: 34.6

Gene sequence:

>1344_bases
ATGGATCAACAAAAAGATCAATGGGCATCAAAACTAGGGTTTATCTTATCTTCCGCTGGGGCTGCGGTTGGATTAGGAGC
AATTTGGAAATTCCCATATATGACTGGGATGAATGGTGGAGGAGCTTTCTTCTTTATCTTTATCTTATTCACAGTCATTA
TCGGATTACCTTTGTTAATTGCCGAATTTATTATAGGTAGAGGTGCACAAAAAGAGGCAATTTCAGCCTATCAGAAGCTT
GCTCCAAAAAGTATATTCTCCTTTATTGGTCATTGGGGAGTAATTGGTGCCTTTATATTAATGTCTTTCTATTCCGTTGT
AGGCGGATGGGTATTAATTTACAGTCTTCTTTCTATTCCCGGAATGGTGATTACCGATGATGCACAATACGCAGAATTAT
TTGCATCTATAACAGGTAATCCATTACTAACTATTGTAGGTCTTGCACTATTTATCTTTATTAATTCTTTTGTTATATCT
TCCGGTATAAAAAATGGAATTGAGAAATATAGTAAAGTTTTAATGCCATTGTTATTTATATTCTTTATTATAATTGTTAT
ACGATCTGTTACTTTCGATGGTGCTATGGAAGGAATTCAGTTCTTCCTTCAACCCGATTTTTCAAAATTAAATGGTGAAA
ATATTCTATATGCATTAGGTCAGGCATTTTTCTCACTTGCAGTGGGTATTTCAGTGATGGTTACGTATAGTTCTTATTTA
GATAAAGATGTAAGCTTAGGCAGCTCAGCAGCTTCCGTTTCGATCATGAATATATTTGTATCATTGCTAGCAGGACTTGC
GATTTTCCCAATTGTATTTTCATTTGGGTTAGAGCCAGCAGAAGGTCCAGGACTTCTATTTATTGTTCTTCCTGAAGCAT
TTGCACAAATGCCGTTTGGTGAAGTCTTCTTAAGTCTATTTTTACTTTTATTCTTATTCGCTATCTTAACATCTTCTTTC
AGTATGCTAGAAATCATCACTGCAGCTGTAACTGAAAAAAAGAATGTTTCTCGAAAATCGGTTGCTTGGATAGCAGGTAT
TCTTGTATTTGTTGCTGGTATTCCAGCTGCGTTATCCTCAAATTTACTTGCTGATTTTCATATATTTGGTAAGACTGTTT
TTGATGCCAGTGATTTTCTTGTCAGTAACGTTATGTTGCCGGCTGGTTGTTTATTTATATCTATATTTATTGGCTTCAAA
ATGGATAAACAGCTTGTTAAGCAAGAATTTAGTTATGGAAATAATTTAGGTAACGGTATATTCCAAACATGGTATCAACT
CATGCGTTGGGTAGTACCTTTTACCATTATTATCGTTTTTCTTTACTCAATCGGGGTAATATAA

Upstream 100 bases:

>100_bases
TTTTCATTGTATTTACAAATCTAATACCTTCTCTTAACATCTTGTTCTTTTATGTTATACTTATAAAATAATTTTTTTAT
AACGAAAGGAATTTGACATT

Downstream 100 bases:

>100_bases
AACTAAATAGATATTTTGTGCCTCTCATCTATTTGATGAGAGGTTTTTTATAACGAGCTTAAACTAGTCAACTGGTAAAA
GTCTTACTAATTGGGAGTGA

Product: sodium-dependent transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MDQQKDQWASKLGFILSSAGAAVGLGAIWKFPYMTGMNGGGAFFFIFILFTVIIGLPLLIAEFIIGRGAQKEAISAYQKL
APKSIFSFIGHWGVIGAFILMSFYSVVGGWVLIYSLLSIPGMVITDDAQYAELFASITGNPLLTIVGLALFIFINSFVIS
SGIKNGIEKYSKVLMPLLFIFFIIIVIRSVTFDGAMEGIQFFLQPDFSKLNGENILYALGQAFFSLAVGISVMVTYSSYL
DKDVSLGSSAASVSIMNIFVSLLAGLAIFPIVFSFGLEPAEGPGLLFIVLPEAFAQMPFGEVFLSLFLLLFLFAILTSSF
SMLEIITAAVTEKKNVSRKSVAWIAGILVFVAGIPAALSSNLLADFHIFGKTVFDASDFLVSNVMLPAGCLFISIFIGFK
MDKQLVKQEFSYGNNLGNGIFQTWYQLMRWVVPFTIIIVFLYSIGVI

Sequences:

>Translated_447_residues
MDQQKDQWASKLGFILSSAGAAVGLGAIWKFPYMTGMNGGGAFFFIFILFTVIIGLPLLIAEFIIGRGAQKEAISAYQKL
APKSIFSFIGHWGVIGAFILMSFYSVVGGWVLIYSLLSIPGMVITDDAQYAELFASITGNPLLTIVGLALFIFINSFVIS
SGIKNGIEKYSKVLMPLLFIFFIIIVIRSVTFDGAMEGIQFFLQPDFSKLNGENILYALGQAFFSLAVGISVMVTYSSYL
DKDVSLGSSAASVSIMNIFVSLLAGLAIFPIVFSFGLEPAEGPGLLFIVLPEAFAQMPFGEVFLSLFLLLFLFAILTSSF
SMLEIITAAVTEKKNVSRKSVAWIAGILVFVAGIPAALSSNLLADFHIFGKTVFDASDFLVSNVMLPAGCLFISIFIGFK
MDKQLVKQEFSYGNNLGNGIFQTWYQLMRWVVPFTIIIVFLYSIGVI
>Mature_447_residues
MDQQKDQWASKLGFILSSAGAAVGLGAIWKFPYMTGMNGGGAFFFIFILFTVIIGLPLLIAEFIIGRGAQKEAISAYQKL
APKSIFSFIGHWGVIGAFILMSFYSVVGGWVLIYSLLSIPGMVITDDAQYAELFASITGNPLLTIVGLALFIFINSFVIS
SGIKNGIEKYSKVLMPLLFIFFIIIVIRSVTFDGAMEGIQFFLQPDFSKLNGENILYALGQAFFSLAVGISVMVTYSSYL
DKDVSLGSSAASVSIMNIFVSLLAGLAIFPIVFSFGLEPAEGPGLLFIVLPEAFAQMPFGEVFLSLFLLLFLFAILTSSF
SMLEIITAAVTEKKNVSRKSVAWIAGILVFVAGIPAALSSNLLADFHIFGKTVFDASDFLVSNVMLPAGCLFISIFIGFK
MDKQLVKQEFSYGNNLGNGIFQTWYQLMRWVVPFTIIIVFLYSIGVI

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI21361581, Length=387, Percent_Identity=27.1317829457364, Blast_Score=135, Evalue=1e-31,
Organism=Homo sapiens, GI4507043, Length=386, Percent_Identity=29.0155440414508, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI7657587, Length=389, Percent_Identity=27.5064267352185, Blast_Score=132, Evalue=5e-31,
Organism=Homo sapiens, GI188528618, Length=390, Percent_Identity=27.4358974358974, Blast_Score=130, Evalue=3e-30,
Organism=Homo sapiens, GI171184408, Length=390, Percent_Identity=27.1794871794872, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI171184406, Length=390, Percent_Identity=27.1794871794872, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI171184404, Length=390, Percent_Identity=27.1794871794872, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI197276623, Length=347, Percent_Identity=27.3775216138329, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI54607094, Length=347, Percent_Identity=27.3775216138329, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI4507041, Length=393, Percent_Identity=26.2086513994911, Blast_Score=115, Evalue=1e-25,
Organism=Homo sapiens, GI134304856, Length=381, Percent_Identity=27.8215223097113, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI289191351, Length=394, Percent_Identity=26.3959390862944, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI4557046, Length=394, Percent_Identity=26.3959390862944, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI289191377, Length=394, Percent_Identity=26.3959390862944, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI92859670, Length=417, Percent_Identity=25.6594724220624, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI11181770, Length=299, Percent_Identity=28.0936454849498, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI33354281, Length=304, Percent_Identity=25.9868421052632, Blast_Score=105, Evalue=9e-23,
Organism=Homo sapiens, GI58219014, Length=302, Percent_Identity=27.1523178807947, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI194018524, Length=300, Percent_Identity=25.6666666666667, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI51468073, Length=299, Percent_Identity=24.4147157190635, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI5032097, Length=376, Percent_Identity=25.531914893617, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI12408638, Length=280, Percent_Identity=25, Blast_Score=91, Evalue=3e-18,
Organism=Homo sapiens, GI67782317, Length=423, Percent_Identity=24.3498817966903, Blast_Score=87, Evalue=5e-17,
Organism=Homo sapiens, GI67782313, Length=423, Percent_Identity=24.3498817966903, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI67782315, Length=423, Percent_Identity=24.3498817966903, Blast_Score=86, Evalue=8e-17,
Organism=Homo sapiens, GI197276625, Length=111, Percent_Identity=39.6396396396396, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI218563756, Length=378, Percent_Identity=25.1322751322751, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI21361693, Length=114, Percent_Identity=32.4561403508772, Blast_Score=83, Evalue=6e-16,
Organism=Homo sapiens, GI300360519, Length=198, Percent_Identity=29.7979797979798, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI6005715, Length=199, Percent_Identity=33.1658291457286, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI289191353, Length=172, Percent_Identity=30.2325581395349, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=420, Percent_Identity=25.4761904761905, Blast_Score=120, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI133952791, Length=424, Percent_Identity=26.6509433962264, Blast_Score=112, Evalue=6e-25,
Organism=Caenorhabditis elegans, GI71995588, Length=397, Percent_Identity=25.1889168765743, Blast_Score=107, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI17554804, Length=460, Percent_Identity=26.5217391304348, Blast_Score=106, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17555248, Length=213, Percent_Identity=30.9859154929577, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI71998244, Length=349, Percent_Identity=26.647564469914, Blast_Score=81, Evalue=9e-16,
Organism=Caenorhabditis elegans, GI17542050, Length=113, Percent_Identity=31.858407079646, Blast_Score=69, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17535731, Length=113, Percent_Identity=32.7433628318584, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI17136952, Length=384, Percent_Identity=26.8229166666667, Blast_Score=149, Evalue=5e-36,
Organism=Drosophila melanogaster, GI281364394, Length=384, Percent_Identity=26.8229166666667, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28574704, Length=384, Percent_Identity=26.8229166666667, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI17136950, Length=384, Percent_Identity=26.8229166666667, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI28574702, Length=384, Percent_Identity=26.8229166666667, Blast_Score=146, Evalue=3e-35,
Organism=Drosophila melanogaster, GI45550877, Length=411, Percent_Identity=28.7104622871046, Blast_Score=133, Evalue=2e-31,
Organism=Drosophila melanogaster, GI45551183, Length=406, Percent_Identity=28.5714285714286, Blast_Score=132, Evalue=3e-31,
Organism=Drosophila melanogaster, GI24762620, Length=401, Percent_Identity=27.6807980049875, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI45551088, Length=404, Percent_Identity=27.7227722772277, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24652942, Length=404, Percent_Identity=27.7227722772277, Blast_Score=124, Evalue=2e-28,
Organism=Drosophila melanogaster, GI281364136, Length=405, Percent_Identity=26.4197530864197, Blast_Score=121, Evalue=1e-27,
Organism=Drosophila melanogaster, GI24661428, Length=382, Percent_Identity=27.4869109947644, Blast_Score=116, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24639514, Length=409, Percent_Identity=24.9388753056235, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI221329674, Length=409, Percent_Identity=24.9388753056235, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI19921936, Length=387, Percent_Identity=24.5478036175711, Blast_Score=112, Evalue=8e-25,
Organism=Drosophila melanogaster, GI24639516, Length=429, Percent_Identity=23.5431235431235, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI19921352, Length=396, Percent_Identity=24.4949494949495, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24584353, Length=396, Percent_Identity=24.4949494949495, Blast_Score=98, Evalue=1e-20,
Organism=Drosophila melanogaster, GI281363702, Length=375, Percent_Identity=25.8666666666667, Blast_Score=96, Evalue=4e-20,
Organism=Drosophila melanogaster, GI281363700, Length=340, Percent_Identity=26.4705882352941, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24582567, Length=390, Percent_Identity=27.4358974358974, Blast_Score=92, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24639853, Length=381, Percent_Identity=26.509186351706, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24654186, Length=201, Percent_Identity=33.3333333333333, Blast_Score=85, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24655079, Length=300, Percent_Identity=26, Blast_Score=85, Evalue=1e-16,
Organism=Drosophila melanogaster, GI281365034, Length=189, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 48721; Mature: 48721

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MDQQKDQWASKLGFILSSAGAAVGLGAIWKFPYMTGMNGGGAFFFIFILFTVIIGLPLLI
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AEFIIGRGAQKEAISAYQKLAPKSIFSFIGHWGVIGAFILMSFYSVVGGWVLIYSLLSIP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVITDDAQYAELFASITGNPLLTIVGLALFIFINSFVISSGIKNGIEKYSKVLMPLLFI
CEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFIIIVIRSVTFDGAMEGIQFFLQPDFSKLNGENILYALGQAFFSLAVGISVMVTYSSYL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKDVSLGSSAASVSIMNIFVSLLAGLAIFPIVFSFGLEPAEGPGLLFIVLPEAFAQMPFG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCHH
EVFLSLFLLLFLFAILTSSFSMLEIITAAVTEKKNVSRKSVAWIAGILVFVAGIPAALSS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
NLLADFHIFGKTVFDASDFLVSNVMLPAGCLFISIFIGFKMDKQLVKQEFSYGNNLGNGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
FQTWYQLMRWVVPFTIIIVFLYSIGVI
HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDQQKDQWASKLGFILSSAGAAVGLGAIWKFPYMTGMNGGGAFFFIFILFTVIIGLPLLI
CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHHHH
AEFIIGRGAQKEAISAYQKLAPKSIFSFIGHWGVIGAFILMSFYSVVGGWVLIYSLLSIP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GMVITDDAQYAELFASITGNPLLTIVGLALFIFINSFVISSGIKNGIEKYSKVLMPLLFI
CEEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFIIIVIRSVTFDGAMEGIQFFLQPDFSKLNGENILYALGQAFFSLAVGISVMVTYSSYL
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
DKDVSLGSSAASVSIMNIFVSLLAGLAIFPIVFSFGLEPAEGPGLLFIVLPEAFAQMPFG
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHCCHH
EVFLSLFLLLFLFAILTSSFSMLEIITAAVTEKKNVSRKSVAWIAGILVFVAGIPAALSS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHH
NLLADFHIFGKTVFDASDFLVSNVMLPAGCLFISIFIGFKMDKQLVKQEFSYGNNLGNGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
FQTWYQLMRWVVPFTIIIVFLYSIGVI
HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]