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The map label for this gene is ydeE [H]

Identifier: 23098177

GI number: 23098177

Start: 768593

End: 769456

Strand: Direct

Name: ydeE [H]

Synonym: OB0722

Alternate gene names: 23098177

Gene position: 768593-769456 (Clockwise)

Preceding gene: 23098176

Following gene: 23098178

Centisome position: 21.17

GC content: 34.38

Gene sequence:

>864_bases
ATGTTACACGAGTTAAATCATGTTATTGATTATATTGAGGAGCATTTAACGGAGGATTTATCTTTAGAGAGCATTTCTGA
ATTTGCTGGAGTATCAGACTACCATTTTAGAAAGATATTCTTTTATATTGCAGGCATAACACTTAGTGAATACATTAAAA
ATCGGAGATTATCTGAAGCTAATAAAGATTTATTGAATGGTGAGAAAGTGACTGATGTTGCTTTCAAGTACAGGTATGAA
TCATTAGATGGATTCACTAGAGCCTTTAAAAATTGGAGCGGTATATTGCCCTCAAATGTATTCAAGACTGGTTTAAGTAA
ATATTTCCCTAAACTTTCATTCGTAATAAATGTAAAGGGAGGTTTAGCTATGGATGTTCGAATCGTAGAAAAACCAGCTT
TTAATTTAGTTGGTGTAACGAAGCGTGTTCCAATGCAATTTGAAGGTGTGAATAATGAAATTGTTAAGCTTGCACAAAGT
ATTACAGATGCTCAACAAGAGGAAATGCATTCCCTGCAAAATATCGAGCCCTATGAAGTGGTAAACGCTTCTTATGATGC
GGATGCGAACTTTTTAAAAGAAGAAGGAGATTTAACGCATTTAATAGGAGTTCTTACAACTTTAGATCAAGTTAGTGATC
GGTTAGAAAAAGTGTCTATACCCGCTTGTACTTGGGCTGTTTTTCCGAATGAAGGACCATTTCCTGATACGTTACAACAA
ACCATGGCAAGAACTTATTCTGAATGGTTCCCTACTTCAGATTATGAAGTAATCGAAGCTCCATCTTTTTCGTTTACTAA
GATGAATGAGTATAAAGAAAATTATGCTTATAGTGAAATATGGATTCCAGTGCGAAAAAAGTGA

Upstream 100 bases:

>100_bases
TTAGAATACGATTTTTGTAGTAATCGATATAATTTATATAAGAAATGTCGAGTATGATGAACGTTGCTCTGATACGATAA
AAAAGAAAGGTGGGGTGATA

Downstream 100 bases:

>100_bases
AAGTGAGACTTTAAAAAGCGTTTTATTTCAGCGTGTTACAAAACATGTTGAGATAAAACGTTTTCTGTTTTACATTCATA
TTTATTAATTTTAAAATGAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MLHELNHVIDYIEEHLTEDLSLESISEFAGVSDYHFRKIFFYIAGITLSEYIKNRRLSEANKDLLNGEKVTDVAFKYRYE
SLDGFTRAFKNWSGILPSNVFKTGLSKYFPKLSFVINVKGGLAMDVRIVEKPAFNLVGVTKRVPMQFEGVNNEIVKLAQS
ITDAQQEEMHSLQNIEPYEVVNASYDADANFLKEEGDLTHLIGVLTTLDQVSDRLEKVSIPACTWAVFPNEGPFPDTLQQ
TMARTYSEWFPTSDYEVIEAPSFSFTKMNEYKENYAYSEIWIPVRKK

Sequences:

>Translated_287_residues
MLHELNHVIDYIEEHLTEDLSLESISEFAGVSDYHFRKIFFYIAGITLSEYIKNRRLSEANKDLLNGEKVTDVAFKYRYE
SLDGFTRAFKNWSGILPSNVFKTGLSKYFPKLSFVINVKGGLAMDVRIVEKPAFNLVGVTKRVPMQFEGVNNEIVKLAQS
ITDAQQEEMHSLQNIEPYEVVNASYDADANFLKEEGDLTHLIGVLTTLDQVSDRLEKVSIPACTWAVFPNEGPFPDTLQQ
TMARTYSEWFPTSDYEVIEAPSFSFTKMNEYKENYAYSEIWIPVRKK
>Mature_287_residues
MLHELNHVIDYIEEHLTEDLSLESISEFAGVSDYHFRKIFFYIAGITLSEYIKNRRLSEANKDLLNGEKVTDVAFKYRYE
SLDGFTRAFKNWSGILPSNVFKTGLSKYFPKLSFVINVKGGLAMDVRIVEKPAFNLVGVTKRVPMQFEGVNNEIVKLAQS
ITDAQQEEMHSLQNIEPYEVVNASYDADANFLKEEGDLTHLIGVLTTLDQVSDRLEKVSIPACTWAVFPNEGPFPDTLQQ
TMARTYSEWFPTSDYEVIEAPSFSFTKMNEYKENYAYSEIWIPVRKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=88, Percent_Identity=35.2272727272727, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI87081928, Length=102, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 32966; Mature: 32966

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHELNHVIDYIEEHLTEDLSLESISEFAGVSDYHFRKIFFYIAGITLSEYIKNRRLSEA
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKDLLNGEKVTDVAFKYRYESLDGFTRAFKNWSGILPSNVFKTGLSKYFPKLSFVINVKG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECC
GLAMDVRIVEKPAFNLVGVTKRVPMQFEGVNNEIVKLAQSITDAQQEEMHSLQNIEPYEV
CCEEEEEEECCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VNASYDADANFLKEEGDLTHLIGVLTTLDQVSDRLEKVSIPACTWAVFPNEGPFPDTLQQ
CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
TMARTYSEWFPTSDYEVIEAPSFSFTKMNEYKENYAYSEIWIPVRKK
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC
>Mature Secondary Structure
MLHELNHVIDYIEEHLTEDLSLESISEFAGVSDYHFRKIFFYIAGITLSEYIKNRRLSEA
CCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKDLLNGEKVTDVAFKYRYESLDGFTRAFKNWSGILPSNVFKTGLSKYFPKLSFVINVKG
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEEEECC
GLAMDVRIVEKPAFNLVGVTKRVPMQFEGVNNEIVKLAQSITDAQQEEMHSLQNIEPYEV
CCEEEEEEECCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VNASYDADANFLKEEGDLTHLIGVLTTLDQVSDRLEKVSIPACTWAVFPNEGPFPDTLQQ
CCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHH
TMARTYSEWFPTSDYEVIEAPSFSFTKMNEYKENYAYSEIWIPVRKK
HHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]