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The map label for this gene is mrnC [H]

Identifier: 23097555

GI number: 23097555

Start: 121143

End: 121559

Strand: Direct

Name: mrnC [H]

Synonym: OB0100

Alternate gene names: 23097555

Gene position: 121143-121559 (Clockwise)

Preceding gene: 23097554

Following gene: 23097556

Centisome position: 3.34

GC content: 38.37

Gene sequence:

>417_bases
ATGAAACCGAATGATGTGAAGCAGCTAAAGAGCCTTGCACTTGCTTATATAGGTGATTCTATATTTGAATTATATATTCG
AGAATATCTATTAGAGCGTGGTACGGTAAATCCTAATAAGTTACATCAGTCCGCAACATCGTATGTCGCGGGAAAAACAC
AGGCAATGGTTATTTTATATTGGTTGGATGTTGACGGATTTCTTACGGAAGAAGAACAAAAAGTTGTTGCCCGTGGAAGA
AATGCTAAATCAGGTTCGGTACCAAAGAATATAAGTGTCCAAACGTATCGGTATAGTACTGCGTTTGAGGCACTTATTGG
GTATCACTATATGATGAAAAACGAGGATCGATTAGAAGAACTTATTCAAAATGCAATTCAGTACGCGGAAGAAAGGAGAG
ATAGCCGTGGACAATGA

Upstream 100 bases:

>100_bases
GTAATTTCGCTAGAGCGGATGAGATTCGTGATATGCTCAAAGAAAAAGGTATCGTACTCGAAGATACTCCACAAGGTGTG
CGTTGGAAAAGAGGTAAGTA

Downstream 100 bases:

>100_bases
AGTCATTATGGGAAGGAATCCTGTTATGGAAGCTCTGAAATCTGGGCGGTCAGTAAATAAAGTGATGGTTACAGAACAAA
TACAAGGTTCCACTTTTCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MKPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILYWLDVDGFLTEEEQKVVARGR
NAKSGSVPKNISVQTYRYSTAFEALIGYHYMMKNEDRLEELIQNAIQYAEERRDSRGQ

Sequences:

>Translated_138_residues
MKPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILYWLDVDGFLTEEEQKVVARGR
NAKSGSVPKNISVQTYRYSTAFEALIGYHYMMKNEDRLEELIQNAIQYAEERRDSRGQ
>Mature_138_residues
MKPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILYWLDVDGFLTEEEQKVVARGR
NAKSGSVPKNISVQTYRYSTAFEALIGYHYMMKNEDRLEELIQNAIQYAEERRDSRGQ

Specific function: Might be an RNase involved in RNA processing [H]

COG id: COG1939

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RNase III domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000999
- InterPro:   IPR008226 [H]

Pfam domain/function: PF00636 Ribonuclease_3 [H]

EC number: NA

Molecular weight: Translated: 15888; Mature: 15888

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEE
WLDVDGFLTEEEQKVVARGRNAKSGSVPKNISVQTYRYSTAFEALIGYHYMMKNEDRLEE
EECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHH
LIQNAIQYAEERRDSRGQ
HHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKPNDVKQLKSLALAYIGDSIFELYIREYLLERGTVNPNKLHQSATSYVAGKTQAMVILY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEE
WLDVDGFLTEEEQKVVARGRNAKSGSVPKNISVQTYRYSTAFEALIGYHYMMKNEDRLEE
EECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCHHHHHH
LIQNAIQYAEERRDSRGQ
HHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]