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The map label for this gene is ykfC [H]

Identifier: 23097535

GI number: 23097535

Start: 82211

End: 83470

Strand: Direct

Name: ykfC [H]

Synonym: OB0080

Alternate gene names: 23097535

Gene position: 82211-83470 (Clockwise)

Preceding gene: 23097534

Following gene: 23097536

Centisome position: 2.26

GC content: 42.38

Gene sequence:

>1260_bases
ATGTTGATGAACCAAATTCTGTCACGGGACAATCTCATTCTCGCACTAAAGCGAGTCGAACGAAATAAAGGAAGTCATGG
CATAGATGAAATGTCCGTAAAATTCCTACTAAGACATCTCTATGATAACTGGGATTCCCTTCGGGAGAACTTGAGGAAAG
GAACCTATACACCTTCTCCTGTCCGCCGTGTCGAAATCCCGAAACCAAGCGGAGGAGTTCGGATGTTAGGTATTCCAACC
GTGACGGATCGTTTCATTCAACAGGCTATTGCCCAAGTGCTTCATACAATTTTTGACCCCACCTTCTCAGAACATAGCTA
TGGATTCAGGCCCAACCGTCGAGGACATGACGCTGTGAGGAAGGCAAGGGGGCTTATTAAAGAAGGATACAGATGGGTAA
TTGATATGGACCTAGAGAAATTCTTTGATAAGGTGAACCATGATAAGCTCATGGGTGTTTTAGCGAAGCGCATCAAGGAT
AAGGAATTGCTTCGGCTTATTCGGAAATACCTACAATCTGGCGTCATGATAAATGGGATAGTAGTTAGCTCCGAAGAAGG
CACTCCGCAAGGCGGGCCGTTGAGCCCTCTTCTTTCTAACATTATATTAGATGATTTAGATAAGGAGCTGGAGGAGCGTG
GGCTACGTTTCGTTCGTTATGCGGATGACTGCAACATCTATGTGAGAACAAAGAAAGCTGGGAATCGTGTAATGAATTCC
ATTACTACATTTATTGAAGAGAAACTTCGCTTGAAAGTAAATAAAGAGAAATCAGCAGTGGACCGGCCTTGGAAACGTAA
GTTTCTTGGTTTTAGTTTCACCAATGGAAAGAATCCAAAAATTAGAATCGCAAAAGAAAGTATTATGCGTCTAAAACAGA
AAATCAGGGAAATAACTTCACGTTCCAAGCCATTTCCTATGGAAATAAGAATTGAGAAATTAAACAAATACCTGATGGGT
TGGTGCGGGTATTACGCTTTAGCGGAGACCCCTTCAAAGTTTGAGGAGTTCGATAAGTGGATAAGAAGAAGATTGCGCAT
GTGTATGTGGAAACAATGGAAGCTTCCACGGACAAAAGTCCGAAAGCTGATTAGCTTGGGTGTTCCTGACCACAAAGCAT
ACGAATGGGGAAACACCAGAAAGAATTATTGGCGTATCTCCAAGAGTCCAATCTTAAGCAGAACCCTAGGCAACTCCTAT
TGGAGTAGACTAGGGCTCAAAAGTCTGTATCAAAGGTATGAATTTATTCGTAATACTTAA

Upstream 100 bases:

>100_bases
ATCCAAAGGAGGACGTAGTGAATCTACAGGGGACTTTGGAAGGGTGGAGTGGAACTTGCACAAATAGAACGTCACATTCA
CGAAGAAAGGAAACCCAAGT

Downstream 100 bases:

>100_bases
TTGAACCGCCGTATACCGAACGGTACGTACGGTGGTGTGAGAGAACGGGGGTTAGTCGCCCCCTTCTACTCTATTGAAAA
GGAAATTATTTACTTCGAGC

Product: recombinase for Bh.Int

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLLRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRRGHDAVRKARGLIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEIRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT

Sequences:

>Translated_419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLLRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRRGHDAVRKARGLIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEIRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT
>Mature_419_residues
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLLRHLYDNWDSLRENLRKGTYTPSPVRRVEIPKPSGGVRMLGIPT
VTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRRGHDAVRKARGLIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKD
KELLRLIRKYLQSGVMINGIVVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITSRSKPFPMEIRIEKLNKYLMG
WCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKVRKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSY
WSRLGLKSLYQRYEFIRNT

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=244, Percent_Identity=33.1967213114754, Blast_Score=127, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6226520, Length=211, Percent_Identity=33.175355450237, Blast_Score=117, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49432; Mature: 49432

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLLRHLYDNWDSLRENLRKGTYTPSP
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
VRRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRRGHDAVR
CCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
KARGLIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGI
HHHHHHHHCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
VVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHH
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITS
HHHHHHHHHHHHCCCHHHHHCCCHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RSKPFPMEIRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLMNQILSRDNLILALKRVERNKGSHGIDEMSVKFLLRHLYDNWDSLRENLRKGTYTPSP
CCHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC
VRRVEIPKPSGGVRMLGIPTVTDRFIQQAIAQVLHTIFDPTFSEHSYGFRPNRRGHDAVR
CCEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHH
KARGLIKEGYRWVIDMDLEKFFDKVNHDKLMGVLAKRIKDKELLRLIRKYLQSGVMINGI
HHHHHHHHCCEEEEECCHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCEEEEE
VVSSEEGTPQGGPLSPLLSNIILDDLDKELEERGLRFVRYADDCNIYVRTKKAGNRVMNS
EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECHHHHHHHHH
ITTFIEEKLRLKVNKEKSAVDRPWKRKFLGFSFTNGKNPKIRIAKESIMRLKQKIREITS
HHHHHHHHHHHHCCCHHHHHCCCHHHHHCCCEECCCCCCEEEEHHHHHHHHHHHHHHHHH
RSKPFPMEIRIEKLNKYLMGWCGYYALAETPSKFEEFDKWIRRRLRMCMWKQWKLPRTKV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
RKLISLGVPDHKAYEWGNTRKNYWRISKSPILSRTLGNSYWSRLGLKSLYQRYEFIRNT
HHHHHCCCCCCCCCCCCCCCCHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]