Click here to switch to the map view.

The map label for this gene is rbfA [H]

Identifier: 229918670

GI number: 229918670

Start: 2918072

End: 2918419

Strand: Direct

Name: rbfA [H]

Synonym: EAT1b_2957

Alternate gene names: 229918670

Gene position: 2918072-2918419 (Clockwise)

Preceding gene: 229918669

Following gene: 229918671

Centisome position: 97.27

GC content: 44.83

Gene sequence:

>348_bases
ATGAAAATTCGTGCCCAACGTGTTGCCGAGCAAATGCGTAAAGAAATTACAGATGTCTTGTTACGGGAAGTCAGTGACCC
GCGTACAAAAAACGCCACGATTACGAGCGTTGATGTAACGGGTGACTTACAACAAGCAACGGTCTATTATACGGTGCTTG
GTGATGAGGAAGATGTGAAAGCGGAAACGCAAGCTGGTCTCGATAAGGCGAAAGGATTTATCCGTCGCGAAATTGGGAAC
CGCATCCGTCTTCGGAAAACACCAGAGATCTCGTTTGAATACGATTCTTCAGTCGCATATGGTAGCCATATCGATTCGTT
GATTCGTGATTTGAACAAAGATCAATAA

Upstream 100 bases:

>100_bases
AATCAAAGTAGAGAAATTTGATGACATCAAAGTAGACGATGTCATTGAAGCGTTCGTCATGAAAGAAGTCGAACGTAAAT
AATGTGAGGAGGGATCACGT

Downstream 100 bases:

>100_bases
TTTGAAAGGGGAGACGTCGTTCTCCCTTTTTTTATATGGAGGGATGAAATTGGAACCGAACGGAGTGCTCGTACTCGATA
AAGATGCTGGCATGACGAGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 115; Mature: 115

Protein sequence:

>115_residues
MKIRAQRVAEQMRKEITDVLLREVSDPRTKNATITSVDVTGDLQQATVYYTVLGDEEDVKAETQAGLDKAKGFIRREIGN
RIRLRKTPEISFEYDSSVAYGSHIDSLIRDLNKDQ

Sequences:

>Translated_115_residues
MKIRAQRVAEQMRKEITDVLLREVSDPRTKNATITSVDVTGDLQQATVYYTVLGDEEDVKAETQAGLDKAKGFIRREIGN
RIRLRKTPEISFEYDSSVAYGSHIDSLIRDLNKDQ
>Mature_115_residues
MKIRAQRVAEQMRKEITDVLLREVSDPRTKNATITSVDVTGDLQQATVYYTVLGDEEDVKAETQAGLDKAKGFIRREIGN
RIRLRKTPEISFEYDSSVAYGSHIDSLIRDLNKDQ

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

Organism=Escherichia coli, GI1789558, Length=108, Percent_Identity=44.4444444444444, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13088; Mature: 13088

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIRAQRVAEQMRKEITDVLLREVSDPRTKNATITSVDVTGDLQQATVYYTVLGDEEDVK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCHHH
AETQAGLDKAKGFIRREIGNRIRLRKTPEISFEYDSSVAYGSHIDSLIRDLNKDQ
HHHHCCHHHHHHHHHHHHCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKIRAQRVAEQMRKEITDVLLREVSDPRTKNATITSVDVTGDLQQATVYYTVLGDEEDVK
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEEECCCCHHH
AETQAGLDKAKGFIRREIGNRIRLRKTPEISFEYDSSVAYGSHIDSLIRDLNKDQ
HHHHCCHHHHHHHHHHHHCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA