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The map label for this gene is dapL [H]

Identifier: 229918489

GI number: 229918489

Start: 2740989

End: 2742110

Strand: Direct

Name: dapL [H]

Synonym: EAT1b_2776

Alternate gene names: 229918489

Gene position: 2740989-2742110 (Clockwise)

Preceding gene: 229918488

Following gene: 229918490

Centisome position: 91.37

GC content: 49.47

Gene sequence:

>1122_bases
ATGAATTGGGCAATTGAAGCGAGAAGACAGCTGCATTTAATTCCGGAAGCCGGATATGAAGAGTTCAAAACACAAGCGAC
ACTTGAGCAATTGATTCGATCGCTCGATTCGTCACGTGTTCATATCACGCACTGGCGAACAGGTCTTTTCGTCCGGGTAG
ATGGTCTCGTCGGTGAGAAGACGATTGGATATCGAGCCGATATGGATGGACTGCCCATCACGGAAGAGACGGGGCTAGAG
TTCGCATCGATTCATGAAGGCATGATGCATGCATGCGGACATGATGTGCACATGTCAATCGCACTTGGATTAATTAAACG
AGCGGTCGAGGAACCGCTTAACCATCACCTTGTCGTCTTTTTCCAACCGGCCGAAGAGGGACCGGGTGGTGCCGAACCGA
TGGCGAAATCAGAATTGTTCTATCACTTCCGTCCGGATGCATTGTTCGGCTTACATGTCGCGCCTGAATATCCTGTCGGC
ATGGTCGCCTCACGACCGGGCGTGTTGTTCGCGAGTGCGCGAGAGCTCCATATCACCATTCATGGAAAAGGGGGGCATGG
TGCTTTCCCTCACGCGGGAATTGACGCTGTCATCGTTCAGGCCGCTCTCATCATGCAACTGCAAACGATTGTGTCTCGTA
ACATTGACCCGATGGGAAGTGCGGTCGTCAGTATCGGAAAAGTCGCAGCAGGAACGAAAGAAAATATCATCGCTGATACG
GCCAAACTGGATGGAACGGTCCGCGCCTTGTCTGATAAAGAAATGGTCGTGCTTGAAAGCCGGATTCGTCAAATCATCGC
CGGAGTCGAGATGACGTATAACGTACAAATCGACCTTGAATTCGGCAATCGGTATCACGAAGTCGTCAATGACGAACGTT
ATCTTTATCAATTCGAGGAAGCGGTTGAAGAGATCGGCTATTCTTATAAAACATGTGTCCCTGCCATGACGGGTGAGGAT
TTTGGATATATGTTGAAACAGGTCCCTGGATTTATGGTTTGGTTAGGAGTGAACGATATGGGGTCTGGACTCCATCAATC
GACACTCAACCCGGATGAACGTTCGATCGAAGTGGCCATCGATCTTTTCGACCATTACTTCCGAACTGTCATGATTCAAT
AA

Upstream 100 bases:

>100_bases
TCCGGGACACGTGGATGCTTTCAACAGAATCGATGTTGGAGCTGGCGCAAGTCCAGGCGTTTTGGAAAATCGTCGAAGAA
ATTACGAAGGAGACTGAGTT

Downstream 100 bases:

>100_bases
CACGAAGCGGTCTCGATTGAGTCCGCTTTTAGTGTGCCCAAAAAGGAGTGAACGAGTGAGAAAAAGGGAAAGATTTATTC
ATGTAAAGCGACGATTTTGT

Product: amidohydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MNWAIEARRQLHLIPEAGYEEFKTQATLEQLIRSLDSSRVHITHWRTGLFVRVDGLVGEKTIGYRADMDGLPITEETGLE
FASIHEGMMHACGHDVHMSIALGLIKRAVEEPLNHHLVVFFQPAEEGPGGAEPMAKSELFYHFRPDALFGLHVAPEYPVG
MVASRPGVLFASARELHITIHGKGGHGAFPHAGIDAVIVQAALIMQLQTIVSRNIDPMGSAVVSIGKVAAGTKENIIADT
AKLDGTVRALSDKEMVVLESRIRQIIAGVEMTYNVQIDLEFGNRYHEVVNDERYLYQFEEAVEEIGYSYKTCVPAMTGED
FGYMLKQVPGFMVWLGVNDMGSGLHQSTLNPDERSIEVAIDLFDHYFRTVMIQ

Sequences:

>Translated_373_residues
MNWAIEARRQLHLIPEAGYEEFKTQATLEQLIRSLDSSRVHITHWRTGLFVRVDGLVGEKTIGYRADMDGLPITEETGLE
FASIHEGMMHACGHDVHMSIALGLIKRAVEEPLNHHLVVFFQPAEEGPGGAEPMAKSELFYHFRPDALFGLHVAPEYPVG
MVASRPGVLFASARELHITIHGKGGHGAFPHAGIDAVIVQAALIMQLQTIVSRNIDPMGSAVVSIGKVAAGTKENIIADT
AKLDGTVRALSDKEMVVLESRIRQIIAGVEMTYNVQIDLEFGNRYHEVVNDERYLYQFEEAVEEIGYSYKTCVPAMTGED
FGYMLKQVPGFMVWLGVNDMGSGLHQSTLNPDERSIEVAIDLFDHYFRTVMIQ
>Mature_373_residues
MNWAIEARRQLHLIPEAGYEEFKTQATLEQLIRSLDSSRVHITHWRTGLFVRVDGLVGEKTIGYRADMDGLPITEETGLE
FASIHEGMMHACGHDVHMSIALGLIKRAVEEPLNHHLVVFFQPAEEGPGGAEPMAKSELFYHFRPDALFGLHVAPEYPVG
MVASRPGVLFASARELHITIHGKGGHGAFPHAGIDAVIVQAALIMQLQTIVSRNIDPMGSAVVSIGKVAAGTKENIIADT
AKLDGTVRALSDKEMVVLESRIRQIIAGVEMTYNVQIDLEFGNRYHEVVNDERYLYQFEEAVEEIGYSYKTCVPAMTGED
FGYMLKQVPGFMVWLGVNDMGSGLHQSTLNPDERSIEVAIDLFDHYFRTVMIQ

Specific function: Catalyzes the conversion of N-acetyl-diaminopimelate to diaminopimelate and acetate [H]

COG id: COG1473

COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family. DapL subfamily [H]

Homologues:

Organism=Escherichia coli, GI87081880, Length=271, Percent_Identity=29.1512915129151, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017439
- InterPro:   IPR010168
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.47 [H]

Molecular weight: Translated: 41430; Mature: 41430

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNWAIEARRQLHLIPEAGYEEFKTQATLEQLIRSLDSSRVHITHWRTGLFVRVDGLVGEK
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCC
TIGYRADMDGLPITEETGLEFASIHEGMMHACGHDVHMSIALGLIKRAVEEPLNHHLVVF
CCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
FQPAEEGPGGAEPMAKSELFYHFRPDALFGLHVAPEYPVGMVASRPGVLFASARELHITI
EEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCEEEEECEEEEEEE
HGKGGHGAFPHAGIDAVIVQAALIMQLQTIVSRNIDPMGSAVVSIGKVAAGTKENIIADT
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEHH
AKLDGTVRALSDKEMVVLESRIRQIIAGVEMTYNVQIDLEFGNRYHEVVNDERYLYQFEE
HHCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHHCCCHHHHHHHH
AVEEIGYSYKTCVPAMTGEDFGYMLKQVPGFMVWLGVNDMGSGLHQSTLNPDERSIEVAI
HHHHHCCCHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHCCCCHHCCCCCCCCHHHHHH
DLFDHYFRTVMIQ
HHHHHHHHHEECC
>Mature Secondary Structure
MNWAIEARRQLHLIPEAGYEEFKTQATLEQLIRSLDSSRVHITHWRTGLFVRVDGLVGEK
CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEEEEECCCCCC
TIGYRADMDGLPITEETGLEFASIHEGMMHACGHDVHMSIALGLIKRAVEEPLNHHLVVF
CCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEE
FQPAEEGPGGAEPMAKSELFYHFRPDALFGLHVAPEYPVGMVASRPGVLFASARELHITI
EEECCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCEEECCCCEEEEECEEEEEEE
HGKGGHGAFPHAGIDAVIVQAALIMQLQTIVSRNIDPMGSAVVSIGKVAAGTKENIIADT
EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCEEHH
AKLDGTVRALSDKEMVVLESRIRQIIAGVEMTYNVQIDLEFGNRYHEVVNDERYLYQFEE
HHCCCEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEECCCHHHHHHCCCHHHHHHHH
AVEEIGYSYKTCVPAMTGEDFGYMLKQVPGFMVWLGVNDMGSGLHQSTLNPDERSIEVAI
HHHHHCCCHHHHCCCCCCCHHHHHHHHCCCEEEEEECCHHCCCCHHCCCCCCCCHHHHHH
DLFDHYFRTVMIQ
HHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA