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The map label for this gene is yqgF [C]

Identifier: 229918437

GI number: 229918437

Start: 2696240

End: 2696662

Strand: Direct

Name: yqgF [C]

Synonym: EAT1b_2724

Alternate gene names: 229918437

Gene position: 2696240-2696662 (Clockwise)

Preceding gene: 229918436

Following gene: 229918438

Centisome position: 89.88

GC content: 52.96

Gene sequence:

>423_bases
ATGAAGCGAGTCATGGGACTCGATGTCGGATCGAAGACGATTGGTGTCGCGGTGAGTGACCTGATGGGATGGACGGCGCA
AGGTGTGGAAACGGTCTACTGGACCGAACCTGACTTTGACGAAGCCGTCCGTCTCCTTCGTCCGTTTATCGAGCAGTACG
ATGTGAAAGAAGTCGTCGTCGGTCATCCGAAAAACATGAATGGGACAGTCGGCCCGCGTGGTGAAGCGTCCGAGGCATTT
GCCGAGGCGTTCACAGAACAGACGGGTTTACCTTGCGTGTTGGTGGATGAACGATTAACGACGATGCAAGCGGAACGGAT
GCTCATTTCAGCGGATGTCAGCCGCAAAAAGAGAAAAGCGGTCATCGACAAAATGGCGGCCGTGATGATTTTACAAAACT
ACCTGGATCGTTCCGGGAAATAA

Upstream 100 bases:

>100_bases
CGTCATAATGATGCGCGAAACTTGATTCGCAAAATTGAACGGGATGAACTTCTCGAAGAGTTGGTCAAATCGTATTTGAA
CGATCGTAGAGAGGATTAAT

Downstream 100 bases:

>100_bases
GGAGGAATCTCTCATGGCAGAAATCCGTCGTGAAGAAGAAATGTACCGTATTCCAGATGAAAATGGAGACGAACATTTAT
TTGCAGAAATTTTCCGTATG

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHPKNMNGTVGPRGEASEAF
AEAFTEQTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVIDKMAAVMILQNYLDRSGK

Sequences:

>Translated_140_residues
MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHPKNMNGTVGPRGEASEAF
AEAFTEQTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVIDKMAAVMILQNYLDRSGK
>Mature_140_residues
MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVVGHPKNMNGTVGPRGEASEAF
AEAFTEQTGLPCVLVDERLTTMQAERMLISADVSRKKRKAVIDKMAAVMILQNYLDRSGK

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=136, Percent_Identity=31.6176470588235, Blast_Score=68, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 15538; Mature: 15538

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV
CCCCCCCCCCCHHHHHHHHHHHCCHHCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHH
GHPKNMNGTVGPRGEASEAFAEAFTEQTGLPCVLVDERLTTMQAERMLISADVSRKKRKA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
VIDKMAAVMILQNYLDRSGK
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKRVMGLDVGSKTIGVAVSDLMGWTAQGVETVYWTEPDFDEAVRLLRPFIEQYDVKEVVV
CCCCCCCCCCCHHHHHHHHHHHCCHHCCCEEEEECCCCHHHHHHHHHHHHHHCCHHHHHH
GHPKNMNGTVGPRGEASEAFAEAFTEQTGLPCVLVDERLTTMQAERMLISADVSRKKRKA
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHH
VIDKMAAVMILQNYLDRSGK
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA