| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yrrC [H]
Identifier: 229918434
GI number: 229918434
Start: 2690772
End: 2692982
Strand: Direct
Name: yrrC [H]
Synonym: EAT1b_2721
Alternate gene names: 229918434
Gene position: 2690772-2692982 (Clockwise)
Preceding gene: 229918433
Following gene: 229918435
Centisome position: 89.7
GC content: 53.19
Gene sequence:
>2211_bases ATGATGGCAGCACCTTATGAGTTGACTGGAAAAGTCATTCGCGTCCTGTTTCAATCAGAAGAAGAGGCGCATACGATTGC GCTCGTACGTATAAAAGAAAAGAATTTTGAGACGGATGAGACCGAGATGGTCATCGCAGGCGTCGGAGTCGGCATTGAGA AGGGCGAGACGTATAAGGCGCACGGTCGTCTCGTCGAACACCCTCGATTCGGAAAACAGATGAAGGCGGATTGGATTCGC CGTGTCGTCCCGATGACGAAACGGGCTGCCGTCCGCTTTTTGACGAACGGGTCTTTCCCTGGAATCGGTCAAAAGACGGC GCAGAAGATTGCAGATTCTCTCGGGGACGATTGTATCGACCAGATTGTGAAACATCCGAGCATCTTGTCCGAGGTCGACG GATTGAAAGAAAAGCAGGCACGTGTGATCACCGAGCGCCTGAACGTCTTATATGGGGTCGATCAATTACTTTTATTTCTC GCTCCATTCGACGTGACACCGCGTCTCGCCTCAAAAATCCATAAAGAGTATGAAGGACGAGCGATGGAGACGATTGAGAA GAATCCGTATGCGCTCATGTACGACGTACAGGGCATCGGCTTCAAGACGGCGGATGCCATCGCGGCGCACTTCGGGATTC AAGGCATTCATCCCGAACGCATCGCGGCAGCCGTTCTTTACGTATTAGAACTCGAACAAGGGAACGGTCATCTCTACGTG ACGGCAGAACAACTTGAAGCCGAGATGCCTCGAATCATCGGGGCGGACCCGGGTGAAGCGCTCGTCACGGCATTAGAGTC ACTTGCCAAAGAAGAACGGGTCGTCATCGATGACGGGGTCGTCTATCACCCTCGTGTGTTCCGTGCTGAGCGAAAAGCGG CAGAAGAGTTGGCGCGCATCATGGCGACATCGACAACAGAGGATGTGGATATGACGACCATCTTCGATGCGGTCGGACGT GTCGAGGAAATGTTTTCAATCGAATATGCGACCCAACAGCGAGAAGCCATCGAACTTGCGCTCAAGTCACCGCTCATGGT TCTCACAGGTGGTCCAGGTACCGGGAAGACGACGGTCGTCCGAGGGATCATTCATGCACTCAGCGACGTCTTCGATTGGA AGTTAGATCCCGTTCCGAACCAACCGTTCCCGTTCGTCTTGGCCGCACCGACGGGTCGAGCGGCGAAACGCCTAAGCGAG TCTACAGGGCTACCGGCCTCGACGATTCATCGGCTGTTAAAGTTCGACGGTAGTTCGTTCCAAGTCGATGAGACGAATCC GCTTGTCGGGAAAGTGCTCATCGTCGATGAGGCGTCGATGATTGACATCTTCTTGTTCCGAAGCTTGCTCAAGGCGGTAC CGAACGGCATGAAAATCTTGTTCGTTGGAGACCGCGATCAGCTCCCGTCTGTCGGACCGGGGCAAGTACTTGCCGATTTG ATGGCGACAGAAGGGATTCCGGTCGTCCGCCTCGACGTCGTCCACCGTCAGGCGTCGGAATCGAGCATCCTCCGACTTGC CCATTCCTTGAACGCCAAAAAGATGCCAGAAGATTTATTGGCGTCACTGCCGGACCGGCGCTTCTATACGGCGAATCAGG AGACGGCACTTCAAGCGATTTGTCAGATGGCAGGAGCGGCTCTCCGAAAAGGATATTCACCGTTTGATATTCAAGTGCTC GCACCGACATATCGAGGGGTATGTGGAATTGACGGACTGAATGAAGCACTTCAAAACGTATTCAATCCAAAATCAAGTGC CCGTGAAGTGAAGCATGGGACGCGCATTTACCGAAACGGTGATAAAGTGCTACAACTCGTCAACAACGCCGAGGAGAACG TCTATAACGGGGACATCGGGGAAATCACGAACATCTTCTACGCGAAGGAAAATGTCGATAAGGTCGACAAGATTTATATC CGATTCGACCAGACAGAAGTAGAGTACAACCGTAGTGAATGGGACCAGTTCACCCATGCCTACGCCATCACGATCCATAA GTCACAAGGTTCCGAGTTCCCAATCGTGCTCATGCCGGTCTTCTTCAACGGAGGATTCCGATCGTCGCGCAACTTGATTT ATACAGCTGTGACTCGGGCGAAGAAGAGTTTACTCTTGTTTGGTGACGTGCGTGCGCTCGAGGCGGCGACGCGAGAAGAG GAGCCGGTGCGACGGACAAAATTGGTCGAGCGCTTAGGCGGGAAGTCTTGA
Upstream 100 bases:
>100_bases CGAATCGAGCAAATCTTGAGTCTGTTCGACTAGGGCATTTGTTCAATCGATTCATCTCGGGCTATAATGGATGATGGAAA AATAGCTGGAGGTGTCGGAT
Downstream 100 bases:
>100_bases CGTCTTTCCGAACGCGTGTGATAATGACGAATAGACAACTGAAACGATACAGACGATGAAGGAAATGAGTACGTCGTCAC CGCCTCTACAGAGACATCTT
Product: helicase, RecD/TraA family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 736; Mature: 736
Protein sequence:
>736_residues MMAAPYELTGKVIRVLFQSEEEAHTIALVRIKEKNFETDETEMVIAGVGVGIEKGETYKAHGRLVEHPRFGKQMKADWIR RVVPMTKRAAVRFLTNGSFPGIGQKTAQKIADSLGDDCIDQIVKHPSILSEVDGLKEKQARVITERLNVLYGVDQLLLFL APFDVTPRLASKIHKEYEGRAMETIEKNPYALMYDVQGIGFKTADAIAAHFGIQGIHPERIAAAVLYVLELEQGNGHLYV TAEQLEAEMPRIIGADPGEALVTALESLAKEERVVIDDGVVYHPRVFRAERKAAEELARIMATSTTEDVDMTTIFDAVGR VEEMFSIEYATQQREAIELALKSPLMVLTGGPGTGKTTVVRGIIHALSDVFDWKLDPVPNQPFPFVLAAPTGRAAKRLSE STGLPASTIHRLLKFDGSSFQVDETNPLVGKVLIVDEASMIDIFLFRSLLKAVPNGMKILFVGDRDQLPSVGPGQVLADL MATEGIPVVRLDVVHRQASESSILRLAHSLNAKKMPEDLLASLPDRRFYTANQETALQAICQMAGAALRKGYSPFDIQVL APTYRGVCGIDGLNEALQNVFNPKSSAREVKHGTRIYRNGDKVLQLVNNAEENVYNGDIGEITNIFYAKENVDKVDKIYI RFDQTEVEYNRSEWDQFTHAYAITIHKSQGSEFPIVLMPVFFNGGFRSSRNLIYTAVTRAKKSLLLFGDVRALEAATREE EPVRRTKLVERLGGKS
Sequences:
>Translated_736_residues MMAAPYELTGKVIRVLFQSEEEAHTIALVRIKEKNFETDETEMVIAGVGVGIEKGETYKAHGRLVEHPRFGKQMKADWIR RVVPMTKRAAVRFLTNGSFPGIGQKTAQKIADSLGDDCIDQIVKHPSILSEVDGLKEKQARVITERLNVLYGVDQLLLFL APFDVTPRLASKIHKEYEGRAMETIEKNPYALMYDVQGIGFKTADAIAAHFGIQGIHPERIAAAVLYVLELEQGNGHLYV TAEQLEAEMPRIIGADPGEALVTALESLAKEERVVIDDGVVYHPRVFRAERKAAEELARIMATSTTEDVDMTTIFDAVGR VEEMFSIEYATQQREAIELALKSPLMVLTGGPGTGKTTVVRGIIHALSDVFDWKLDPVPNQPFPFVLAAPTGRAAKRLSE STGLPASTIHRLLKFDGSSFQVDETNPLVGKVLIVDEASMIDIFLFRSLLKAVPNGMKILFVGDRDQLPSVGPGQVLADL MATEGIPVVRLDVVHRQASESSILRLAHSLNAKKMPEDLLASLPDRRFYTANQETALQAICQMAGAALRKGYSPFDIQVL APTYRGVCGIDGLNEALQNVFNPKSSAREVKHGTRIYRNGDKVLQLVNNAEENVYNGDIGEITNIFYAKENVDKVDKIYI RFDQTEVEYNRSEWDQFTHAYAITIHKSQGSEFPIVLMPVFFNGGFRSSRNLIYTAVTRAKKSLLLFGDVRALEAATREE EPVRRTKLVERLGGKS >Mature_736_residues MMAAPYELTGKVIRVLFQSEEEAHTIALVRIKEKNFETDETEMVIAGVGVGIEKGETYKAHGRLVEHPRFGKQMKADWIR RVVPMTKRAAVRFLTNGSFPGIGQKTAQKIADSLGDDCIDQIVKHPSILSEVDGLKEKQARVITERLNVLYGVDQLLLFL APFDVTPRLASKIHKEYEGRAMETIEKNPYALMYDVQGIGFKTADAIAAHFGIQGIHPERIAAAVLYVLELEQGNGHLYV TAEQLEAEMPRIIGADPGEALVTALESLAKEERVVIDDGVVYHPRVFRAERKAAEELARIMATSTTEDVDMTTIFDAVGR VEEMFSIEYATQQREAIELALKSPLMVLTGGPGTGKTTVVRGIIHALSDVFDWKLDPVPNQPFPFVLAAPTGRAAKRLSE STGLPASTIHRLLKFDGSSFQVDETNPLVGKVLIVDEASMIDIFLFRSLLKAVPNGMKILFVGDRDQLPSVGPGQVLADL MATEGIPVVRLDVVHRQASESSILRLAHSLNAKKMPEDLLASLPDRRFYTANQETALQAICQMAGAALRKGYSPFDIQVL APTYRGVCGIDGLNEALQNVFNPKSSAREVKHGTRIYRNGDKVLQLVNNAEENVYNGDIGEITNIFYAKENVDKVDKIYI RFDQTEVEYNRSEWDQFTHAYAITIHKSQGSEFPIVLMPVFFNGGFRSSRNLIYTAVTRAKKSLLLFGDVRALEAATREE EPVRRTKLVERLGGKS
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=429, Percent_Identity=31.002331002331, Blast_Score=119, Evalue=5e-28,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 81624; Mature: 81624
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMAAPYELTGKVIRVLFQSEEEAHTIALVRIKEKNFETDETEMVIAGVGVGIEKGETYKA CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEC HGRLVEHPRFGKQMKADWIRRVVPMTKRAAVRFLTNGSFPGIGQKTAQKIADSLGDDCID CCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCHHHHH QIVKHPSILSEVDGLKEKQARVITERLNVLYGVDQLLLFLAPFDVTPRLASKIHKEYEGR HHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC AMETIEKNPYALMYDVQGIGFKTADAIAAHFGIQGIHPERIAAAVLYVLELEQGNGHLYV HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCCCEEEE TAEQLEAEMPRIIGADPGEALVTALESLAKEERVVIDDGVVYHPRVFRAERKAAEELARI EHHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHHHHHHHHHH MATSTTEDVDMTTIFDAVGRVEEMFSIEYATQQREAIELALKSPLMVLTGGPGTGKTTVV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH RGIIHALSDVFDWKLDPVPNQPFPFVLAAPTGRAAKRLSESTGLPASTIHRLLKFDGSSF HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCE QVDETNPLVGKVLIVDEASMIDIFLFRSLLKAVPNGMKILFVGDRDQLPSVGPGQVLADL EECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH MATEGIPVVRLDVVHRQASESSILRLAHSLNAKKMPEDLLASLPDRRFYTANQETALQAI HHCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCHHHHHHHH CQMAGAALRKGYSPFDIQVLAPTYRGVCGIDGLNEALQNVFNPKSSAREVKHGTRIYRNG HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHCCH DKVLQLVNNAEENVYNGDIGEITNIFYAKENVDKVDKIYIRFDQTEVEYNRSEWDQFTHA HHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCCEEEEEEEECCHHHCCHHHHHHHHEE YAITIHKSQGSEFPIVLMPVFFNGGFRSSRNLIYTAVTRAKKSLLLFGDVRALEAATREE EEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEHHHHHHCEEEEECHHHHHHHHCCC EPVRRTKLVERLGGKS CHHHHHHHHHHHCCCC >Mature Secondary Structure MMAAPYELTGKVIRVLFQSEEEAHTIALVRIKEKNFETDETEMVIAGVGVGIEKGETYKA CCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCCEEEC HGRLVEHPRFGKQMKADWIRRVVPMTKRAAVRFLTNGSFPGIGQKTAQKIADSLGDDCID CCCEECCCCCCHHHHHHHHHHHHCHHHHHHHHHEECCCCCCCCHHHHHHHHHHHCHHHHH QIVKHPSILSEVDGLKEKQARVITERLNVLYGVDQLLLFLAPFDVTPRLASKIHKEYEGR HHHHCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC AMETIEKNPYALMYDVQGIGFKTADAIAAHFGIQGIHPERIAAAVLYVLELEQGNGHLYV HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHEEEECCCCEEEE TAEQLEAEMPRIIGADPGEALVTALESLAKEERVVIDDGVVYHPRVFRAERKAAEELARI EHHHHHHCCCHHCCCCCHHHHHHHHHHHHHCCCEEEECCEEECCHHHHHHHHHHHHHHHH MATSTTEDVDMTTIFDAVGRVEEMFSIEYATQQREAIELALKSPLMVLTGGPGTGKTTVV HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH RGIIHALSDVFDWKLDPVPNQPFPFVLAAPTGRAAKRLSESTGLPASTIHRLLKFDGSSF HHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCE QVDETNPLVGKVLIVDEASMIDIFLFRSLLKAVPNGMKILFVGDRDQLPSVGPGQVLADL EECCCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHH MATEGIPVVRLDVVHRQASESSILRLAHSLNAKKMPEDLLASLPDRRFYTANQETALQAI HHCCCCCEEEEHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCHHHHHHHH CQMAGAALRKGYSPFDIQVLAPTYRGVCGIDGLNEALQNVFNPKSSAREVKHGTRIYRNG HHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHCHHHHCCH DKVLQLVNNAEENVYNGDIGEITNIFYAKENVDKVDKIYIRFDQTEVEYNRSEWDQFTHA HHHHHHHHHHHHCCCCCCHHHHHHHEEECCCCCCCEEEEEEEECCHHHCCHHHHHHHHEE YAITIHKSQGSEFPIVLMPVFFNGGFRSSRNLIYTAVTRAKKSLLLFGDVRALEAATREE EEEEEECCCCCCCCEEEEEEEECCCCCCCCCEEEEEHHHHHHCEEEEECHHHHHHHHCCC EPVRRTKLVERLGGKS CHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]