| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is dtd
Identifier: 229918417
GI number: 229918417
Start: 2673756
End: 2674199
Strand: Direct
Name: dtd
Synonym: EAT1b_2703
Alternate gene names: 229918417
Gene position: 2673756-2674199 (Clockwise)
Preceding gene: 229918416
Following gene: 229918418
Centisome position: 89.13
GC content: 52.25
Gene sequence:
>444_bases GTGCGTGTATTATTGCAACGAGTGAAAGAAGCATCGGTCACAGTCGAGGAAGAAGTCGTCGGGGCAATCAACGCCGGATA CTTGCTTCTCGTCGGTGTGACACATGAAGATACAGAAGAGGAAGTGAACTGGCTCGCCGACAAGGTGACCGGGCTTCGCG TCTTCGAGGATGATCAAGAAAAGATGAACTTGTCGATTCAAGATGTGTCTGGTCAAATCTTGTCGGTCTCTCAGTTCACT TTATATGGGGACACGATGAAAGGACGGCGACCTGCTTTCACAAAGGCCGCCAAACCGGACATGGCTGAGACGCTCTATGA AAAATTCAACGAGCGACTCCGGGCGAACGGGCTCATCGTCGAGACGGGACGCTTCGGTGCGATGATGGACGTCGCACTCG TTAATGACGGACCGGTCACGCTCATGCTCGAAAAAAACGCTTGA
Upstream 100 bases:
>100_bases AACGTGAATCACTTGCAGAAAGTCGTCGAGCGCATCAAACAAATCTCAGACGTGTATTCGGTCAGCCGAGTCATGATGAC GTGACGAAAGGAAGAGGAAC
Downstream 100 bases:
>100_bases CAGATGCCGGCTTGATTCGGCATCATGAAGCATATAGTCAAACACCTACGATAAAGAAGAGTACGGTCAACCCACCAGCA AAGAGAGCGATGCCTAGGCT
Product: D-tyrosyl-tRNA(Tyr) deacylase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 147; Mature: 147
Protein sequence:
>147_residues MRVLLQRVKEASVTVEEEVVGAINAGYLLLVGVTHEDTEEEVNWLADKVTGLRVFEDDQEKMNLSIQDVSGQILSVSQFT LYGDTMKGRRPAFTKAAKPDMAETLYEKFNERLRANGLIVETGRFGAMMDVALVNDGPVTLMLEKNA
Sequences:
>Translated_147_residues MRVLLQRVKEASVTVEEEVVGAINAGYLLLVGVTHEDTEEEVNWLADKVTGLRVFEDDQEKMNLSIQDVSGQILSVSQFT LYGDTMKGRRPAFTKAAKPDMAETLYEKFNERLRANGLIVETGRFGAMMDVALVNDGPVTLMLEKNA >Mature_147_residues MRVLLQRVKEASVTVEEEVVGAINAGYLLLVGVTHEDTEEEVNWLADKVTGLRVFEDDQEKMNLSIQDVSGQILSVSQFT LYGDTMKGRRPAFTKAAKPDMAETLYEKFNERLRANGLIVETGRFGAMMDVALVNDGPVTLMLEKNA
Specific function: Hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr). Could be a defense mechanism against a harmful effect of D-tyrosine
COG id: COG1490
COG function: function code J; D-Tyr-tRNAtyr deacylase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DTD family
Homologues:
Organism=Homo sapiens, GI30795227, Length=150, Percent_Identity=42.6666666666667, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI1790320, Length=144, Percent_Identity=53.4722222222222, Blast_Score=155, Evalue=1e-39, Organism=Caenorhabditis elegans, GI115533292, Length=147, Percent_Identity=43.5374149659864, Blast_Score=115, Evalue=1e-26, Organism=Saccharomyces cerevisiae, GI6319982, Length=149, Percent_Identity=43.6241610738255, Blast_Score=128, Evalue=3e-31, Organism=Drosophila melanogaster, GI281361569, Length=146, Percent_Identity=42.4657534246575, Blast_Score=117, Evalue=2e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): DTD_EXISA (C4L533)
Other databases:
- EMBL: CP001615 - RefSeq: YP_002887063.1 - GeneID: 7868907 - GenomeReviews: CP001615_GR - KEGG: eat:EAT1b_2703 - OMA: MKAVIQR - ProtClustDB: PRK05273 - GO: GO:0005737 - HAMAP: MF_00518 - InterPro: IPR003732 - Gene3D: G3DSA:3.50.80.10 - PANTHER: PTHR10472 - TIGRFAMs: TIGR00256
Pfam domain/function: PF02580 Tyr_Deacylase; SSF69500 DTyrtRNA_deacyls
EC number: NA
Molecular weight: Translated: 16339; Mature: 16339
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: ACT_SITE 80-80
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVLLQRVKEASVTVEEEVVGAINAGYLLLVGVTHEDTEEEVNWLADKVTGLRVFEDDQE CHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCHH KMNLSIQDVSGQILSVSQFTLYGDTMKGRRPAFTKAAKPDMAETLYEKFNERLRANGLIV HHEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEE ETGRFGAMMDVALVNDGPVTLMLEKNA ECCCCCCEEEEEEECCCCEEEEEECCC >Mature Secondary Structure MRVLLQRVKEASVTVEEEVVGAINAGYLLLVGVTHEDTEEEVNWLADKVTGLRVFEDDQE CHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCEEEEECCHH KMNLSIQDVSGQILSVSQFTLYGDTMKGRRPAFTKAAKPDMAETLYEKFNERLRANGLIV HHEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEEE ETGRFGAMMDVALVNDGPVTLMLEKNA ECCCCCCEEEEEEECCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA