| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229918380
Identifier: 229918380
GI number: 229918380
Start: 2635904
End: 2637475
Strand: Direct
Name: 229918380
Synonym: EAT1b_2665
Alternate gene names: NA
Gene position: 2635904-2637475 (Clockwise)
Preceding gene: 229918379
Following gene: 229918381
Centisome position: 87.87
GC content: 52.67
Gene sequence:
>1572_bases ATGAGTCGTGGGATAGAGAAAGGGACGGTCACGTATTTTTCGTTTGATGCGCTCAGCATCCACGGGGCCGTCATCAAACA AGGGGTGTTCAAACGAAGCGCCTCGGTTCAGTTAGCAAAAGATGCATACGGAGATGGGAAGATTCTCGATGAGACGGCGT TCAGTCTCGCTTTCGATGAGCTCTGTCGCAAATTGAAAGTAAGACGTGGAATGACGTGTGCCATCGCATTGGACGAGACC GAAGTGTTGTCACGAAAAGTCGAGATTCCTTCTTCGATTCCGAAGGACGAGATTCGTGGCTATCTCTTCATGGAAATCGG GAGCTCGATCATCTTGCCGTTCGATGATGTCTCGTTCGATTATGAAGTGTTAGGAGAAGACGGAGTCAAGACGGACGTCA TGTTGCATGCCGTTTCGATTGAATTGACGAAATCGCTCCGCGCGTATATGAAGAAACGCGGTCTAGCGTTGAAGAAAATC ACGCCACGTTCTGTCGCGGTCGCCAATGGGGTCATGCGTTTATCGGAGATTGATCCGCTTCAATCGACACTACTCTGGCA TATCACGCCGTTTTCGCATCAATTGCTCGTCCTTGAGGAAGGGCAGATCCGTTTCATCCGCTCGATCGAACTAGACCTCC CGTATCAAGTCGGGACGAAAGATGGTGTCGTGACCTATACATATGATGGGACAGGCGAGATGAAGGCCAATCAGTTGGAT GACTGGTTGAACGAACTCGCTCGTTTCCTCGACTTCTATCGGTATTCTCTGCGGACGGACGGTCGGGCTATCGATGAGTT ATACGTTTCGGGAACTGTCCCGGAAGTCGATGACCTCGTCCGTATGATTCAGTCTGAATCCCTCGTCTCTGTGACGCGCG TCGAGCAACCGCTCGCTATCGCCCATGGGACACCGCTATCGCATCAAATGTTGCCACTCCTCGGGATGGCGATGCTTCAA CGCGATCGGGACACGAACTTCATCAACTCGACAGACGTGACGCTCCGCTGGCCAATCGTGACGGGTCTCGTCGCCCTTCT CCTTGGAGGAGGGGCAGCCGGATACTTGTATTATGAGGTCGGCCAACTTGAGGCAGAACAGACGCGAATCGAAGAAGAGT TACAGCTCGTCCAAATTTATCAAACGGAACAAGTGAATTCGAAAGCGCAACAAGTGCTCTCGCTCGACCAGACCGTGACG GCGTTGACCGACATGGAAAAGGATGCGGTGCCTGCACTGCGCGCGTTGACTGAGCAGTTGCCGCCGACGGGCTACGTCTT GACGTATAACTACGCGGACGGCTCCATCATGAGCGTTCGGACCCAGTTCGAGACGTTAGAGGACTTGAACGCATTCCAGC GCTCGCTTATGACCGATGAGCGATTCCTCGACGTCAAACTCCTCGGTGTGACGACGGAGTTGAAAGCGGATGTGGATTCA GAGGAAGAGGAGAACTCGTTAGAAGAAGAGCCGCTCCCACGCTATATCGGAGAGTTCACGTTCATGTTCCAAGACGTTGA GGACGAGTTAACAGAGGAAGAGGAGACGGATGAGGAGGTGGTGAGTCAATGA
Upstream 100 bases:
>100_bases TCCGTTCGTCCCGTCGATTGCGCTCGGGACGATGTTGACGTTTTGGTTTAGTGAAAGTTTTTTTGATTGGTATTTTGAGT TGATGTAGGGGGAAACGATC
Downstream 100 bases:
>100_bases AACGTTCGACAATCTATGCGTTATTTGCGATTTGCCTCCTTGCCGCAATCATCGCACCGGCTTACTTTGGCTATACGTAT TACGTCAAACAAGGAGAAGT
Product: Fimbrial assembly family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 523; Mature: 522
Protein sequence:
>523_residues MSRGIEKGTVTYFSFDALSIHGAVIKQGVFKRSASVQLAKDAYGDGKILDETAFSLAFDELCRKLKVRRGMTCAIALDET EVLSRKVEIPSSIPKDEIRGYLFMEIGSSIILPFDDVSFDYEVLGEDGVKTDVMLHAVSIELTKSLRAYMKKRGLALKKI TPRSVAVANGVMRLSEIDPLQSTLLWHITPFSHQLLVLEEGQIRFIRSIELDLPYQVGTKDGVVTYTYDGTGEMKANQLD DWLNELARFLDFYRYSLRTDGRAIDELYVSGTVPEVDDLVRMIQSESLVSVTRVEQPLAIAHGTPLSHQMLPLLGMAMLQ RDRDTNFINSTDVTLRWPIVTGLVALLLGGGAAGYLYYEVGQLEAEQTRIEEELQLVQIYQTEQVNSKAQQVLSLDQTVT ALTDMEKDAVPALRALTEQLPPTGYVLTYNYADGSIMSVRTQFETLEDLNAFQRSLMTDERFLDVKLLGVTTELKADVDS EEEENSLEEEPLPRYIGEFTFMFQDVEDELTEEEETDEEVVSQ
Sequences:
>Translated_523_residues MSRGIEKGTVTYFSFDALSIHGAVIKQGVFKRSASVQLAKDAYGDGKILDETAFSLAFDELCRKLKVRRGMTCAIALDET EVLSRKVEIPSSIPKDEIRGYLFMEIGSSIILPFDDVSFDYEVLGEDGVKTDVMLHAVSIELTKSLRAYMKKRGLALKKI TPRSVAVANGVMRLSEIDPLQSTLLWHITPFSHQLLVLEEGQIRFIRSIELDLPYQVGTKDGVVTYTYDGTGEMKANQLD DWLNELARFLDFYRYSLRTDGRAIDELYVSGTVPEVDDLVRMIQSESLVSVTRVEQPLAIAHGTPLSHQMLPLLGMAMLQ RDRDTNFINSTDVTLRWPIVTGLVALLLGGGAAGYLYYEVGQLEAEQTRIEEELQLVQIYQTEQVNSKAQQVLSLDQTVT ALTDMEKDAVPALRALTEQLPPTGYVLTYNYADGSIMSVRTQFETLEDLNAFQRSLMTDERFLDVKLLGVTTELKADVDS EEEENSLEEEPLPRYIGEFTFMFQDVEDELTEEEETDEEVVSQ >Mature_522_residues SRGIEKGTVTYFSFDALSIHGAVIKQGVFKRSASVQLAKDAYGDGKILDETAFSLAFDELCRKLKVRRGMTCAIALDETE VLSRKVEIPSSIPKDEIRGYLFMEIGSSIILPFDDVSFDYEVLGEDGVKTDVMLHAVSIELTKSLRAYMKKRGLALKKIT PRSVAVANGVMRLSEIDPLQSTLLWHITPFSHQLLVLEEGQIRFIRSIELDLPYQVGTKDGVVTYTYDGTGEMKANQLDD WLNELARFLDFYRYSLRTDGRAIDELYVSGTVPEVDDLVRMIQSESLVSVTRVEQPLAIAHGTPLSHQMLPLLGMAMLQR DRDTNFINSTDVTLRWPIVTGLVALLLGGGAAGYLYYEVGQLEAEQTRIEEELQLVQIYQTEQVNSKAQQVLSLDQTVTA LTDMEKDAVPALRALTEQLPPTGYVLTYNYADGSIMSVRTQFETLEDLNAFQRSLMTDERFLDVKLLGVTTELKADVDSE EEENSLEEEPLPRYIGEFTFMFQDVEDELTEEEETDEEVVSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58823; Mature: 58691
Theoretical pI: Translated: 4.24; Mature: 4.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGIEKGTVTYFSFDALSIHGAVIKQGVFKRSASVQLAKDAYGDGKILDETAFSLAFDE CCCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEHHHHHHHHHHH LCRKLKVRRGMTCAIALDETEVLSRKVEIPSSIPKDEIRGYLFMEIGSSIILPFDDVSFD HHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCCCHHHHCEEEEEECCCEEEEECCCCCCC YEVLGEDGVKTDVMLHAVSIELTKSLRAYMKKRGLALKKITPRSVAVANGVMRLSEIDPL CEECCCCCCCHHHEEEEHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCHH QSTLLWHITPFSHQLLVLEEGQIRFIRSIELDLPYQVGTKDGVVTYTYDGTGEMKANQLD HHHHEEEECCCCCEEEEEECCCEEEEEEEEECCCEEECCCCCEEEEEECCCCCCCHHHHH DWLNELARFLDFYRYSLRTDGRAIDELYVSGTVPEVDDLVRMIQSESLVSVTRVEQPLAI HHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHCCCEEE AHGTPLSHQMLPLLGMAMLQRDRDTNFINSTDVTLRWPIVTGLVALLLGGGAAGYLYYEV ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEEEE GQLEAEQTRIEEELQLVQIYQTEQVNSKAQQVLSLDQTVTALTDMEKDAVPALRALTEQL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC PPTGYVLTYNYADGSIMSVRTQFETLEDLNAFQRSLMTDERFLDVKLLGVTTELKADVDS CCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHCCCCC EEEENSLEEEPLPRYIGEFTFMFQDVEDELTEEEETDEEVVSQ CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC >Mature Secondary Structure SRGIEKGTVTYFSFDALSIHGAVIKQGVFKRSASVQLAKDAYGDGKILDETAFSLAFDE CCCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCEEHHHHHHHHHHH LCRKLKVRRGMTCAIALDETEVLSRKVEIPSSIPKDEIRGYLFMEIGSSIILPFDDVSFD HHHHHHHHCCCEEEEEECHHHHHHHHCCCCCCCCHHHHCEEEEEECCCEEEEECCCCCCC YEVLGEDGVKTDVMLHAVSIELTKSLRAYMKKRGLALKKITPRSVAVANGVMRLSEIDPL CEECCCCCCCHHHEEEEHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCHH QSTLLWHITPFSHQLLVLEEGQIRFIRSIELDLPYQVGTKDGVVTYTYDGTGEMKANQLD HHHHEEEECCCCCEEEEEECCCEEEEEEEEECCCEEECCCCCEEEEEECCCCCCCHHHHH DWLNELARFLDFYRYSLRTDGRAIDELYVSGTVPEVDDLVRMIQSESLVSVTRVEQPLAI HHHHHHHHHHHHHHHHHCCCCCCHHHHEECCCCCCHHHHHHHHHCCCHHHHHHHCCCEEE AHGTPLSHQMLPLLGMAMLQRDRDTNFINSTDVTLRWPIVTGLVALLLGGGAAGYLYYEV ECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHHHHHHCCCCCEEEEEEE GQLEAEQTRIEEELQLVQIYQTEQVNSKAQQVLSLDQTVTALTDMEKDAVPALRALTEQL CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC PPTGYVLTYNYADGSIMSVRTQFETLEDLNAFQRSLMTDERFLDVKLLGVTTELKADVDS CCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEHHCCCCC EEEENSLEEEPLPRYIGEFTFMFQDVEDELTEEEETDEEVVSQ CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA