BacMap

Definition	Exiguobacterium sp. AT1b, complete genome.
Accession	NC_012673
Length	2,999,895

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The map label for this gene is ytrB [H]

Identifier: 229918323

GI number: 229918323

Start: 2575290

End: 2576171

Strand: Direct

Name: ytrB [H]

Synonym: EAT1b_2608

Alternate gene names: 229918323

Gene position: 2575290-2576171 (Clockwise)

Preceding gene: 229918322

Following gene: 229918324

Centisome position: 85.85

GC content: 50.0

Gene sequence:

>882_bases
ATGCTGAAAGTTGAACAGTTAAGTAAAAAAATTGACCGACAGACGATTCTCGACCGCATCGACTTTACGGTCGAATCAGG
AGAAATCATCGCGCTCGTCGGACGTAACGGTGCCGGTAAGACGACGCTTCTCCGGACGATGGTGGGCATCATCCGCCCAG
ATATGGGAGATGTGCTCTATGGATCGAAGAGTATCTTTAAAGATGCAGGGTTGAAGCGTGACGTCATCTTCGTACCGGAT
TCAGCCGACGCGCTTAAAAATTACACGGTGAATGAGGCAACGGACTTGTATGAGTCGATCTATCCGTCATTCAACCGTAC
CGTCTTCCGTGAGACATTAACGAGATACAACATCGACAACAAAAAGATTCGCCAACTTTCAAAAGGACAAAAGGCACTCG
TCACGTTATCGCTCGCCTTCGCCGTCCAAGCGAAATACTACCTGCTCGACGAACCGACGGACGGTTTAGACGTCGTCGCC
AAATCCGACGTGTTGAAACTGATGATTGCCCAAGTCGAGAATCGGAACTGCTCGATCATCGTCTCGAGTCACCAACTGCA
TGAACTCGAACGCATCGCTGACCGCATCATCATGATTGAAAATGGACGTGTCAAAGCGATCTTGTCGCTCGAAGAGGCAC
GTGCCCTCAGCATCAAGTGGCAAGTCGTCTTCAACGACCATGTCCCGGTCGAACTGCTCGAACGAAAAGATATCGAAATC
ATCAGCGTGACGGGACGTGTCGTGCTGTTCATGGCGAAAGAACGGACGGACGAGCTCGAAGCGTTCATCGATTCATACAA
TCCGATGCTCATCGAAGAGATTCCGATGTCTCTTGAAGACGTCTTCCGTGTCCAGTTAGGAGGAGAAGCCCATGTTGTCT
AA

Upstream 100 bases:

>100_bases
TCGATCAAAAAGATTGCGATTGATTGCCACTATGCGAACGTGCAGTTAGATGAAGCCATCGACGTATTGCGGACGGAATA
TGAGAAAGTAGGGAAAACCA

Downstream 100 bases:

>100_bases
GGTTTTGTTAAAGAAAGATTGGAAACAAGTGTCGCTGCTTTGGATGCTGCTCGTCTTCCTAGGCGTCGTCGCCTTCACAG
TGCCAGTTTGGACACAATTC

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MLKVEQLSKKIDRQTILDRIDFTVESGEIIALVGRNGAGKTTLLRTMVGIIRPDMGDVLYGSKSIFKDAGLKRDVIFVPD
SADALKNYTVNEATDLYESIYPSFNRTVFRETLTRYNIDNKKIRQLSKGQKALVTLSLAFAVQAKYYLLDEPTDGLDVVA
KSDVLKLMIAQVENRNCSIIVSSHQLHELERIADRIIMIENGRVKAILSLEEARALSIKWQVVFNDHVPVELLERKDIEI
ISVTGRVVLFMAKERTDELEAFIDSYNPMLIEEIPMSLEDVFRVQLGGEAHVV

Sequences:

>Translated_293_residues
MLKVEQLSKKIDRQTILDRIDFTVESGEIIALVGRNGAGKTTLLRTMVGIIRPDMGDVLYGSKSIFKDAGLKRDVIFVPD
SADALKNYTVNEATDLYESIYPSFNRTVFRETLTRYNIDNKKIRQLSKGQKALVTLSLAFAVQAKYYLLDEPTDGLDVVA
KSDVLKLMIAQVENRNCSIIVSSHQLHELERIADRIIMIENGRVKAILSLEEARALSIKWQVVFNDHVPVELLERKDIEI
ISVTGRVVLFMAKERTDELEAFIDSYNPMLIEEIPMSLEDVFRVQLGGEAHVV
>Mature_293_residues
MLKVEQLSKKIDRQTILDRIDFTVESGEIIALVGRNGAGKTTLLRTMVGIIRPDMGDVLYGSKSIFKDAGLKRDVIFVPD
SADALKNYTVNEATDLYESIYPSFNRTVFRETLTRYNIDNKKIRQLSKGQKALVTLSLAFAVQAKYYLLDEPTDGLDVVA
KSDVLKLMIAQVENRNCSIIVSSHQLHELERIADRIIMIENGRVKAILSLEEARALSIKWQVVFNDHVPVELLERKDIEI
ISVTGRVVLFMAKERTDELEAFIDSYNPMLIEEIPMSLEDVFRVQLGGEAHVV

Specific function: Part of the ABC transporter complex YtrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein; Cytoplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI31657092, Length=221, Percent_Identity=27.6018099547511, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI27262624, Length=219, Percent_Identity=26.9406392694064, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI27262626, Length=219, Percent_Identity=26.9406392694064, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI27477115, Length=247, Percent_Identity=29.5546558704453, Blast_Score=88, Evalue=1e-17,
Organism=Homo sapiens, GI105990541, Length=195, Percent_Identity=28.2051282051282, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI30795238, Length=234, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI27881501, Length=234, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI27436953, Length=202, Percent_Identity=25.7425742574257, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=25.5813953488372, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=25.5813953488372, Blast_Score=83, Evalue=2e-16,
Organism=Homo sapiens, GI153792144, Length=214, Percent_Identity=26.1682242990654, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI116734710, Length=224, Percent_Identity=28.125, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI21536376, Length=202, Percent_Identity=25.7425742574257, Blast_Score=77, Evalue=3e-14,
Organism=Homo sapiens, GI6005701, Length=207, Percent_Identity=24.6376811594203, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI150417984, Length=200, Percent_Identity=26, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI157502201, Length=213, Percent_Identity=27.6995305164319, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI157502203, Length=213, Percent_Identity=27.6995305164319, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=29.0476190476191, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=29.9107142857143, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI1790739, Length=223, Percent_Identity=26.457399103139, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787164, Length=213, Percent_Identity=26.7605633802817, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1788897, Length=250, Percent_Identity=29.2, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788761, Length=214, Percent_Identity=25.2336448598131, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI87081782, Length=284, Percent_Identity=26.4084507042254, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1786563, Length=220, Percent_Identity=26.8181818181818, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788472, Length=217, Percent_Identity=27.1889400921659, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790544, Length=231, Percent_Identity=26.4069264069264, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=25.3393665158371, Blast_Score=78, Evalue=9e-16,
Organism=Escherichia coli, GI87081791, Length=225, Percent_Identity=28, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787112, Length=209, Percent_Identity=28.2296650717703, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1786345, Length=225, Percent_Identity=22.6666666666667, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI48994943, Length=212, Percent_Identity=24.5283018867925, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789593, Length=215, Percent_Identity=24.1860465116279, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788165, Length=208, Percent_Identity=26.4423076923077, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786803, Length=220, Percent_Identity=25.9090909090909, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786253, Length=194, Percent_Identity=26.2886597938144, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787792, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790525, Length=220, Percent_Identity=27.7272727272727, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI87082268, Length=215, Percent_Identity=26.5116279069767, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI2367384, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787547, Length=225, Percent_Identity=24.8888888888889, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787370, Length=272, Percent_Identity=24.6323529411765, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081834, Length=229, Percent_Identity=26.2008733624454, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=25.1162790697674, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1786319, Length=211, Percent_Identity=26.5402843601896, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=20.5357142857143, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1788506, Length=238, Percent_Identity=26.0504201680672, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1786981, Length=221, Percent_Identity=30.316742081448, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789751, Length=210, Percent_Identity=26.1904761904762, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789963, Length=232, Percent_Identity=25, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787500, Length=206, Percent_Identity=23.7864077669903, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790190, Length=215, Percent_Identity=26.9767441860465, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI87082064, Length=190, Percent_Identity=28.4210526315789, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788053, Length=197, Percent_Identity=25.3807106598985, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788210, Length=211, Percent_Identity=29.3838862559242, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=23.8532110091743, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=26.457399103139, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787041, Length=203, Percent_Identity=25.1231527093596, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789672, Length=219, Percent_Identity=23.7442922374429, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=27.2727272727273, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1789873, Length=229, Percent_Identity=21.8340611353712, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI115533608, Length=207, Percent_Identity=29.951690821256, Blast_Score=85, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71983523, Length=219, Percent_Identity=25.1141552511416, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71983516, Length=219, Percent_Identity=25.1141552511416, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71983510, Length=219, Percent_Identity=25.1141552511416, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17510237, Length=211, Percent_Identity=23.2227488151659, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565586, Length=198, Percent_Identity=25.7575757575758, Blast_Score=72, Evalue=3e-13,
Organism=Saccharomyces cerevisiae, GI6320874, Length=194, Percent_Identity=29.8969072164948, Blast_Score=75, Evalue=1e-14,
Organism=Saccharomyces cerevisiae, GI6321121, Length=194, Percent_Identity=27.319587628866, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24666092, Length=245, Percent_Identity=26.9387755102041, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI24648314, Length=214, Percent_Identity=27.5700934579439, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI116007328, Length=293, Percent_Identity=23.2081911262799, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI28574150, Length=293, Percent_Identity=23.2081911262799, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI24582014, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24582012, Length=202, Percent_Identity=27.2277227722772, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI116007184, Length=191, Percent_Identity=26.1780104712042, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI221500365, Length=191, Percent_Identity=26.1780104712042, Blast_Score=75, Evalue=6e-14,
Organism=Drosophila melanogaster, GI85725262, Length=203, Percent_Identity=27.5862068965517, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI24643672, Length=218, Percent_Identity=28.4403669724771, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24650853, Length=206, Percent_Identity=23.7864077669903, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI221512771, Length=213, Percent_Identity=22.5352112676056, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24650855, Length=206, Percent_Identity=23.7864077669903, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571209, Length=214, Percent_Identity=25.2336448598131, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI62484234, Length=217, Percent_Identity=25.8064516129032, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24585091, Length=223, Percent_Identity=25.5605381165919, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI281362751, Length=206, Percent_Identity=23.7864077669903, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI221500419, Length=240, Percent_Identity=25.8333333333333, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24643674, Length=221, Percent_Identity=23.5294117647059, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 33145; Mature: 33145

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKVEQLSKKIDRQTILDRIDFTVESGEIIALVGRNGAGKTTLLRTMVGIIRPDMGDVLY
CCCHHHHHHHHHHHHHHHHHCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHC
GSKSIFKDAGLKRDVIFVPDSADALKNYTVNEATDLYESIYPSFNRTVFRETLTRYNIDN
CCHHHHHHCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
KKIRQLSKGQKALVTLSLAFAVQAKYYLLDEPTDGLDVVAKSDVLKLMIAQVENRNCSII
HHHHHHHCCCCEEEEEEEEHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
VSSHQLHELERIADRIIMIENGRVKAILSLEEARALSIKWQVVFNDHVPVELLERKDIEI
ECCHHHHHHHHHHHEEEEEECCCEEEEEEECCCEEEEEEEEEEECCCCCHHHHCCCCEEE
ISVTGRVVLFMAKERTDELEAFIDSYNPMLIEEIPMSLEDVFRVQLGGEAHVV
EEECCEEEEEEECCCHHHHHHHHHCCCCEEEHHCCCCHHHHHEEEECCCCCCC
>Mature Secondary Structure
MLKVEQLSKKIDRQTILDRIDFTVESGEIIALVGRNGAGKTTLLRTMVGIIRPDMGDVLY
CCCHHHHHHHHHHHHHHHHHCEEEECCCEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHC
GSKSIFKDAGLKRDVIFVPDSADALKNYTVNEATDLYESIYPSFNRTVFRETLTRYNIDN
CCHHHHHHCCCCCCEEEECCCHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHCCCCH
KKIRQLSKGQKALVTLSLAFAVQAKYYLLDEPTDGLDVVAKSDVLKLMIAQVENRNCSII
HHHHHHHCCCCEEEEEEEEHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEE
VSSHQLHELERIADRIIMIENGRVKAILSLEEARALSIKWQVVFNDHVPVELLERKDIEI
ECCHHHHHHHHHHHEEEEEECCCEEEEEEECCCEEEEEEEEEEECCCCCHHHHCCCCEEE
ISVTGRVVLFMAKERTDELEAFIDSYNPMLIEEIPMSLEDVFRVQLGGEAHVV
EEECCEEEEEEECCCHHHHHHHHHCCCCEEEHHCCCCHHHHHEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]