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The map label for this gene is carC [H]

Identifier: 229918210

GI number: 229918210

Start: 2451942

End: 2453435

Strand: Direct

Name: carC [H]

Synonym: EAT1b_2490

Alternate gene names: 229918210

Gene position: 2451942-2453435 (Clockwise)

Preceding gene: 229918209

Following gene: 229918211

Centisome position: 81.73

GC content: 50.27

Gene sequence:

>1494_bases
GTGTCGAAACAAAGAGTTGCCGTTATTGGGGCAGGACCCGGTGGATTGGCTGCTGCGATGCTACTGGCGCATCGCGGGGT
AGACGTCACCGTATTTGAGAAACAACCGTTTGTAGGCGGCAGAACGTCACGCTTAGAAGTAGGCGAGTTTGCGTTCGACC
GAGGACCTACGTTTTTGAATATGCCGTATATTTTAGAAGAAATTTTTGAAGAGACGGGACGTAATCTGCATGATTATGTC
GAGATGAAACAATTGGAGCCGATGTATGATTTGTACTTTGACCGTGGGACGCGTCAACTCTCGATGACAACAGATCGTGA
TCAGATGTATCGTGCCATCGAAGAACAATTTCCTGGGAATGGGGAAGGCTACGAGCGGTTCATGAGTGAACAGGCGATCA
AACTGTCTAAATTGATGCCTGTGCTTCAGACCGCACATGACAAGCTCACTGACTATGTCTCGTTGCGCGTACTTAAGGCG
CTACCGTTTCTCTCAATCGGTAAATCGCTTTATGACGTCTTGTCCGAGTACTTCACGAGCGAAGAGCTGAAGTATGCGTT
CACGTTCCAGGCCAAATATTTAGGGATGTCCGCCTGGGAATGTCCGGGTGGATTCTCCATCTTATCTTACATGGAACACG
CCTACGGAGTGCATCACCCGATCGGCGGAGTGAACCAGCTGTGTCATGCGATGGCGAAAGTGATTGAAGAAGAGGGAGGC
GTCATTCGTTTAGGCGAACCGGTAGAACGTCTTCTCATGGATGGTCGGAACGTGACGGGTCTCGTGTCCGGAAGTGTCCA
TTATGCGTTTGATGAAGTTGTGATTGGTGCGGATTTCGCACATGCGATGACGTCGCTCGTTCCAGACGGTAAACTATCGA
AGTGGAGTCCGACTCAACTCAAGAAGAAACGTTACTCGTGCTCGACATTTATGCTTTATCTCGGGCTCGATCACGTCTAC
GAGGATGTGGCGCATCACTCGATTCACTTCGCGGACGATTATGAATTGAATGTTAAAGAGATGACACAAGAGTTGAAATT
GAGTGAGGACTTCTCGTTTTATGTACAGAATGCCTCACGTATCGACCCGACACTTGCGCCTCCTGGCAAGTCATCGCTTT
ATGTTCTCGTACCGGTACCGAACAATTTATCTGGCCTTCCATGGGAGACGTTACAAGCGACCATGACAGAGCGCGTTCTT
GATGCGCTTGAGACACGTTCCCCGTACCGGAACATTCGTCAACACATCGAGGTGATGGAAGCATTGACACCTGAGGATTG
GGAAGCGTTCGGTGTATATGAAGGTGCAACGTTCAATCTAGGGCACAACTTATCGCAGATGATGTACTTCCGTCCGCACA
ACCAATTCGAAGAGCTCGACAACGTCTGGCTCGTCGGAGGTGGGACCCACCCAGGAAGTGGGCTTCCGACCATCTTTGAA
TCAGCACGGATCACGACGAACCTTTTGCGTGACCGGGCAGGTGTCGGCCGATGA

Upstream 100 bases:

>100_bases
GAATCTGCTCAATCAACCGATTCAAAATTGAACTTGTCTCCCGTCATTCCTATAATGATAGAGAAGCATAAGAGACTATT
CACATAGGGAGTTGTTGAGT

Downstream 100 bases:

>100_bases
ATATTAGCTTTGTCGGGGCAGGGGTCGGTACATTATATGCCGCTCTTTTATTGACGAAACGCAACCCGTCACTTCAACTC
ACGATTTATGAGAAAGAGGC

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 497; Mature: 496

Protein sequence:

>497_residues
MSKQRVAVIGAGPGGLAAAMLLAHRGVDVTVFEKQPFVGGRTSRLEVGEFAFDRGPTFLNMPYILEEIFEETGRNLHDYV
EMKQLEPMYDLYFDRGTRQLSMTTDRDQMYRAIEEQFPGNGEGYERFMSEQAIKLSKLMPVLQTAHDKLTDYVSLRVLKA
LPFLSIGKSLYDVLSEYFTSEELKYAFTFQAKYLGMSAWECPGGFSILSYMEHAYGVHHPIGGVNQLCHAMAKVIEEEGG
VIRLGEPVERLLMDGRNVTGLVSGSVHYAFDEVVIGADFAHAMTSLVPDGKLSKWSPTQLKKKRYSCSTFMLYLGLDHVY
EDVAHHSIHFADDYELNVKEMTQELKLSEDFSFYVQNASRIDPTLAPPGKSSLYVLVPVPNNLSGLPWETLQATMTERVL
DALETRSPYRNIRQHIEVMEALTPEDWEAFGVYEGATFNLGHNLSQMMYFRPHNQFEELDNVWLVGGGTHPGSGLPTIFE
SARITTNLLRDRAGVGR

Sequences:

>Translated_497_residues
MSKQRVAVIGAGPGGLAAAMLLAHRGVDVTVFEKQPFVGGRTSRLEVGEFAFDRGPTFLNMPYILEEIFEETGRNLHDYV
EMKQLEPMYDLYFDRGTRQLSMTTDRDQMYRAIEEQFPGNGEGYERFMSEQAIKLSKLMPVLQTAHDKLTDYVSLRVLKA
LPFLSIGKSLYDVLSEYFTSEELKYAFTFQAKYLGMSAWECPGGFSILSYMEHAYGVHHPIGGVNQLCHAMAKVIEEEGG
VIRLGEPVERLLMDGRNVTGLVSGSVHYAFDEVVIGADFAHAMTSLVPDGKLSKWSPTQLKKKRYSCSTFMLYLGLDHVY
EDVAHHSIHFADDYELNVKEMTQELKLSEDFSFYVQNASRIDPTLAPPGKSSLYVLVPVPNNLSGLPWETLQATMTERVL
DALETRSPYRNIRQHIEVMEALTPEDWEAFGVYEGATFNLGHNLSQMMYFRPHNQFEELDNVWLVGGGTHPGSGLPTIFE
SARITTNLLRDRAGVGR
>Mature_496_residues
SKQRVAVIGAGPGGLAAAMLLAHRGVDVTVFEKQPFVGGRTSRLEVGEFAFDRGPTFLNMPYILEEIFEETGRNLHDYVE
MKQLEPMYDLYFDRGTRQLSMTTDRDQMYRAIEEQFPGNGEGYERFMSEQAIKLSKLMPVLQTAHDKLTDYVSLRVLKAL
PFLSIGKSLYDVLSEYFTSEELKYAFTFQAKYLGMSAWECPGGFSILSYMEHAYGVHHPIGGVNQLCHAMAKVIEEEGGV
IRLGEPVERLLMDGRNVTGLVSGSVHYAFDEVVIGADFAHAMTSLVPDGKLSKWSPTQLKKKRYSCSTFMLYLGLDHVYE
DVAHHSIHFADDYELNVKEMTQELKLSEDFSFYVQNASRIDPTLAPPGKSSLYVLVPVPNNLSGLPWETLQATMTERVLD
ALETRSPYRNIRQHIEVMEALTPEDWEAFGVYEGATFNLGHNLSQMMYFRPHNQFEELDNVWLVGGGTHPGSGLPTIFES
ARITTNLLRDRAGVGR

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.14.99.-

Molecular weight: Translated: 56009; Mature: 55878

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00982 PHYTOENE_DH

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKQRVAVIGAGPGGLAAAMLLAHRGVDVTVFEKQPFVGGRTSRLEVGEFAFDRGPTFLN
CCCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEHHHHHHCCCCCEEC
MPYILEEIFEETGRNLHDYVEMKQLEPMYDLYFDRGTRQLSMTTDRDQMYRAIEEQFPGN
CHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCC
GEGYERFMSEQAIKLSKLMPVLQTAHDKLTDYVSLRVLKALPFLSIGKSLYDVLSEYFTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
EELKYAFTFQAKYLGMSAWECPGGFSILSYMEHAYGVHHPIGGVNQLCHAMAKVIEEEGG
CCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
VIRLGEPVERLLMDGRNVTGLVSGSVHYAFDEVVIGADFAHAMTSLVPDGKLSKWSPTQL
EEEECCHHHHHHHCCCCEEEEEECCEEEEHHHEEECCHHHHHHHHHCCCCCCCCCCHHHH
KKKRYSCSTFMLYLGLDHVYEDVAHHSIHFADDYELNVKEMTQELKLSEDFSFYVQNASR
HHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHCCCCCHHHHCCCCCC
IDPTLAPPGKSSLYVLVPVPNNLSGLPWETLQATMTERVLDALETRSPYRNIRQHIEVME
CCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ALTPEDWEAFGVYEGATFNLGHNLSQMMYFRPHNQFEELDNVWLVGGGTHPGSGLPTIFE
HCCCCCCHHEEEECCCEECCCCCHHHHHEECCCCHHHHHCCEEEEECCCCCCCCCCHHHH
SARITTNLLRDRAGVGR
HHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SKQRVAVIGAGPGGLAAAMLLAHRGVDVTVFEKQPFVGGRTSRLEVGEFAFDRGPTFLN
CCCEEEEEECCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEHHHHHHCCCCCEEC
MPYILEEIFEETGRNLHDYVEMKQLEPMYDLYFDRGTRQLSMTTDRDQMYRAIEEQFPGN
CHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHCCCCCEEEECCCHHHHHHHHHHHCCCC
GEGYERFMSEQAIKLSKLMPVLQTAHDKLTDYVSLRVLKALPFLSIGKSLYDVLSEYFTS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
EELKYAFTFQAKYLGMSAWECPGGFSILSYMEHAYGVHHPIGGVNQLCHAMAKVIEEEGG
CCCEEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC
VIRLGEPVERLLMDGRNVTGLVSGSVHYAFDEVVIGADFAHAMTSLVPDGKLSKWSPTQL
EEEECCHHHHHHHCCCCEEEEEECCEEEEHHHEEECCHHHHHHHHHCCCCCCCCCCHHHH
KKKRYSCSTFMLYLGLDHVYEDVAHHSIHFADDYELNVKEMTQELKLSEDFSFYVQNASR
HHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCCCHHHHHHHHCCCCCHHHHCCCCCC
IDPTLAPPGKSSLYVLVPVPNNLSGLPWETLQATMTERVLDALETRSPYRNIRQHIEVME
CCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
ALTPEDWEAFGVYEGATFNLGHNLSQMMYFRPHNQFEELDNVWLVGGGTHPGSGLPTIFE
HCCCCCCHHEEEECCCEECCCCCHHHHHEECCCCHHHHHCCEEEEECCCCCCCCCCHHHH
SARITTNLLRDRAGVGR
HHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8467787 [H]