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The map label for this gene is yhcF [H]

Identifier: 229918064

GI number: 229918064

Start: 2298254

End: 2298640

Strand: Direct

Name: yhcF [H]

Synonym: EAT1b_2343

Alternate gene names: 229918064

Gene position: 2298254-2298640 (Clockwise)

Preceding gene: 229918063

Following gene: 229918065

Centisome position: 76.61

GC content: 47.8

Gene sequence:

>387_bases
ATGCAATTCAATACGAGGGCACCAGTTTACCTACAAGTCGTCGACTACTTCAAGAAGAAGATGGCACTCGGTGAACTGAA
AGCTGGGGATGAAATGCCATCCCGGCGAGAACTAGCGAACGATTTAAAAATTAATCCGAACACCGTTCAAAAAGCGTTCA
AGGAAATGGAGGACCAACAATTGATTACGACGGAACGAAATCGACCGAGTCGCGTGACGACAGATGACGTCATCCTCAAA
CACATTCGCTCTGAGATTGTAGACGATGCGGTCGCGGTATTTGTGGAAGCGATTCAAGAACTCGACGTCTCGGTGGACGA
GCTGGTCGAGAAGATTAAACGACAGTACAAGGAGGGGACGTACGATGATCGAAGTGTTGGGAGTTAA

Upstream 100 bases:

>100_bases
GGAGAAAATTTGAAAAAATGATTGACGTCTTAGTGTATTACGCTAATAATACAGTTAGAAAGTGTATTAACCATGTCATA
CACTTAGAAAGGTGATGAAC

Downstream 100 bases:

>100_bases
GAAACGCTATCGCCGAAAGCAAGTCATTGAAGACGTTTCGTTCACAGCAAACAAAGGGGAGATCACGTGCCTGATTGGGC
TGAACGGAACGGGGAAATCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MQFNTRAPVYLQVVDYFKKKMALGELKAGDEMPSRRELANDLKINPNTVQKAFKEMEDQQLITTERNRPSRVTTDDVILK
HIRSEIVDDAVAVFVEAIQELDVSVDELVEKIKRQYKEGTYDDRSVGS

Sequences:

>Translated_128_residues
MQFNTRAPVYLQVVDYFKKKMALGELKAGDEMPSRRELANDLKINPNTVQKAFKEMEDQQLITTERNRPSRVTTDDVILK
HIRSEIVDDAVAVFVEAIQELDVSVDELVEKIKRQYKEGTYDDRSVGS
>Mature_128_residues
MQFNTRAPVYLQVVDYFKKKMALGELKAGDEMPSRRELANDLKINPNTVQKAFKEMEDQQLITTERNRPSRVTTDDVILK
HIRSEIVDDAVAVFVEAIQELDVSVDELVEKIKRQYKEGTYDDRSVGS

Specific function: Possible Transcriptional Regulator Of The Succinyl-CoA- Synthetase Operon. Binds Specifically To The Farr Promoter And Exhibits Weak Binding To The Citrate Synthase And Lipoamide Dehydrogenase Promoters. Binding At The Farr Promoter Is Abolished By Long-

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14749; Mature: 14749

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFNTRAPVYLQVVDYFKKKMALGELKAGDEMPSRRELANDLKINPNTVQKAFKEMEDQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
LITTERNRPSRVTTDDVILKHIRSEIVDDAVAVFVEAIQELDVSVDELVEKIKRQYKEGT
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
YDDRSVGS
CCCCCCCC
>Mature Secondary Structure
MQFNTRAPVYLQVVDYFKKKMALGELKAGDEMPSRRELANDLKINPNTVQKAFKEMEDQQ
CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
LITTERNRPSRVTTDDVILKHIRSEIVDDAVAVFVEAIQELDVSVDELVEKIKRQYKEGT
HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
YDDRSVGS
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]