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The map label for this gene is araQ [H]

Identifier: 229917904

GI number: 229917904

Start: 2119311

End: 2120240

Strand: Direct

Name: araQ [H]

Synonym: EAT1b_2182

Alternate gene names: 229917904

Gene position: 2119311-2120240 (Clockwise)

Preceding gene: 229917903

Following gene: 229917905

Centisome position: 70.65

GC content: 48.17

Gene sequence:

>930_bases
ATGGAACAAAATGCGGAATCACGGCGAATGCTTCCAGATAGCGAAGCGCAGCCGAAACGGAAAGAGGAGCGTCCGCTTAA
AGTGGCGCCGCCTTCTAAGAAGACAACGAATAAGCGATTCGCACGAGGTTTGATTTATACAGGGCTCATCCTTCTCGCGA
TTATCTGTTTCATTCCGTTCTTGATGATGATTGTCAATGCGACACGGACGAATGGAGAAATCATGGCTGGGTTCTCACTT
CTTCCGGGGACGGCGCTCACAGACAACTATGCGACGCTCAGCGAATACATCAACATTTGGAACGGCTTCAAGAACAGCTT
GATCATCTCTGTATCGGTGACGGTCTTGTCTGGTTACTTCTCAGCCCTAACGGCTTACGGCTTTACGTTCTATAACTTTA
GAGGGAAGAATGCGATGTTCATCTTCATGCTTGTCATGATGATGGTGCCAGCGCAACTCGGACTCATTGGATTCTATGAG
ATCTCAAAAACGCTCGGTATTTTGGACACGTTCATTCCATTGATTGTCCCAGCGATTGCAACACCGTTCACCGTCTTCTT
CATCCGTCAATATACGCAAGCGACGCTTCACATCAGTTTGATTGAAGCGGCACGGATTGACGGTGCGAGCGAGCTACGTA
TTTTCCACACAATCGCACTTCCAATGATGATGCCAGCGATTGCGACGATGTCGATTTTCACGTTCATCGGCTCATGGAAC
AACTACTTGATGCCACTTGTCCTCTTGTTCTCGCCTGAGAAATACACGTTGCCTGTTTTGATGGGCTTCTTGAAAGGATC
ACAAGTCGCAGAGAACCTCGGCTCGCTTTACCTGGGCATCGCAATCTCGGTCGTACCGATTATGATTGCCTTCTTGTTCC
TCTCGAAGTACATCGTCAGCAGTATTTCGGCAGGTGCTGTCAAAGAATAA

Upstream 100 bases:

>100_bases
GGTCGCTTACGGCCTATTCTTGATCACGCTGATCTTCTCGGCGGTCGTCTTCAAGGGTATGTTCCGTAAAGAGCGCGCGA
CACAGAAGGGGGCGTAAGCA

Downstream 100 bases:

>100_bases
ATATAGAGAAAAGAGGAAAACACTATGCATTTTAAGAAAGACTTCGTATTCGGGACAGCCACGTCCTCGTACCAAATTGA
AGGCGCACATAACGAAGGAG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MEQNAESRRMLPDSEAQPKRKEERPLKVAPPSKKTTNKRFARGLIYTGLILLAIICFIPFLMMIVNATRTNGEIMAGFSL
LPGTALTDNYATLSEYINIWNGFKNSLIISVSVTVLSGYFSALTAYGFTFYNFRGKNAMFIFMLVMMMVPAQLGLIGFYE
ISKTLGILDTFIPLIVPAIATPFTVFFIRQYTQATLHISLIEAARIDGASELRIFHTIALPMMMPAIATMSIFTFIGSWN
NYLMPLVLLFSPEKYTLPVLMGFLKGSQVAENLGSLYLGIAISVVPIMIAFLFLSKYIVSSISAGAVKE

Sequences:

>Translated_309_residues
MEQNAESRRMLPDSEAQPKRKEERPLKVAPPSKKTTNKRFARGLIYTGLILLAIICFIPFLMMIVNATRTNGEIMAGFSL
LPGTALTDNYATLSEYINIWNGFKNSLIISVSVTVLSGYFSALTAYGFTFYNFRGKNAMFIFMLVMMMVPAQLGLIGFYE
ISKTLGILDTFIPLIVPAIATPFTVFFIRQYTQATLHISLIEAARIDGASELRIFHTIALPMMMPAIATMSIFTFIGSWN
NYLMPLVLLFSPEKYTLPVLMGFLKGSQVAENLGSLYLGIAISVVPIMIAFLFLSKYIVSSISAGAVKE
>Mature_309_residues
MEQNAESRRMLPDSEAQPKRKEERPLKVAPPSKKTTNKRFARGLIYTGLILLAIICFIPFLMMIVNATRTNGEIMAGFSL
LPGTALTDNYATLSEYINIWNGFKNSLIISVSVTVLSGYFSALTAYGFTFYNFRGKNAMFIFMLVMMMVPAQLGLIGFYE
ISKTLGILDTFIPLIVPAIATPFTVFFIRQYTQATLHISLIEAARIDGASELRIFHTIALPMMMPAIATMSIFTFIGSWN
NYLMPLVLLFSPEKYTLPVLMGFLKGSQVAENLGSLYLGIAISVVPIMIAFLFLSKYIVSSISAGAVKE

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789860, Length=268, Percent_Identity=27.6119402985075, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1787571, Length=291, Percent_Identity=28.8659793814433, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790464, Length=222, Percent_Identity=30.1801801801802, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34291; Mature: 34291

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEQNAESRRMLPDSEAQPKRKEERPLKVAPPSKKTTNKRFARGLIYTGLILLAIICFIPF
CCCCCCHHCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LMMIVNATRTNGEIMAGFSLLPGTALTDNYATLSEYINIWNGFKNSLIISVSVTVLSGYF
HHHHHHCCCCCCCEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
SALTAYGFTFYNFRGKNAMFIFMLVMMMVPAQLGLIGFYEISKTLGILDTFIPLIVPAIA
HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPFTVFFIRQYTQATLHISLIEAARIDGASELRIFHTIALPMMMPAIATMSIFTFIGSWN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NYLMPLVLLFSPEKYTLPVLMGFLKGSQVAENLGSLYLGIAISVVPIMIAFLFLSKYIVS
HHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISAGAVKE
HCCCCCCCC
>Mature Secondary Structure
MEQNAESRRMLPDSEAQPKRKEERPLKVAPPSKKTTNKRFARGLIYTGLILLAIICFIPF
CCCCCCHHCCCCCCCCCCCHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
LMMIVNATRTNGEIMAGFSLLPGTALTDNYATLSEYINIWNGFKNSLIISVSVTVLSGYF
HHHHHHCCCCCCCEEECCEECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHH
SALTAYGFTFYNFRGKNAMFIFMLVMMMVPAQLGLIGFYEISKTLGILDTFIPLIVPAIA
HHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TPFTVFFIRQYTQATLHISLIEAARIDGASELRIFHTIALPMMMPAIATMSIFTFIGSWN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
NYLMPLVLLFSPEKYTLPVLMGFLKGSQVAENLGSLYLGIAISVVPIMIAFLFLSKYIVS
HHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SISAGAVKE
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]