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The map label for this gene is ydcI [H]

Identifier: 229917801

GI number: 229917801

Start: 2028061

End: 2030190

Strand: Direct

Name: ydcI [H]

Synonym: EAT1b_2079

Alternate gene names: 229917801

Gene position: 2028061-2030190 (Clockwise)

Preceding gene: 229917800

Following gene: 229917802

Centisome position: 67.6

GC content: 49.72

Gene sequence:

>2130_bases
GTGATTACGAAAGTGGCTAACGCGTTAAACTTGAAAGTGAACCAAGTCGAGACGGTTCAGCAGCTCGCATCTGAAGGGGC
AACGATTCCGTTCATGGCCCGTTATCGGAAGGAAATGACGGGGAATTTGGACGAAGTTGAAATTAAAGGAATTTTGGATG
CTCTTCAATACGAAGAGAGCCTGCAAAAACGCAAGGCGGATGTCCTGGCTAAATTAGAAGAGTTGGAAAAAAACACGCCT
GAACTAACGAAAGCGTTAGAGGCGGCGACAACCCTTCAACAAGTGGAAGACATCTACTTGCCCTATCGTCCAAAACGCCG
CACGAAAGCAGAGCAGGGACGTGAGAAAGGACTGCAGCCGCTTGCGGACTGGTTCCGGGACAAATCACCCTATTCTTTGG
ACGAGGTAAAAGAACTTTCTCAAGACGTCGAGGTAGAAGAGGCGTTGCCGCTCGTTCATGCGATTATCGGCGAAGAATGG
GGCGAAGAAGCGAAACTGCGCCAGATGCTTCGCGATCGCGTACGAAAAGAAGGACTCTTGCGCTCGAAGAAGAAAAAACA
AGCGGAAGACGAAAAAGAGATTTTTGCGCAGTATTATGAATATGAAGAGAAGATTGCTGGCATTGTCCCGCACCGTGTAC
TCGCCTTGAACCGTGGGGAACGCACGGACGTGCTCCAAGTGAAGGTGGTGTTTGACGAGTCGCGCTTCATGGATCAAGCC
CTCCGTACATACGAACGACTTCCGAAAGAAAAGCGTGAGGTTGTCGAGGCAGCTGTGACGGAGGCGTACAAGAAGTCGGT
CTTCCCCGCCATCGAACGAGAGATTCGTGGTGAGTTGACAGAAAAGGCAGAAGAGCAGGCGATCGATGTCTTCTCAAAAA
ACTTGAAACAACTTTATATGCAGCCGCCCCTACGCGAAGTCGTCGTCTTAGGAATCGACCCGGCTTATCGAACTGGTTGT
AAATGGGCAGTGGTCAATGAAATCGGGAAAGTCGAAGAAGTCGGCGTCTTCTATCCGACTGCACCGAAACACGATATCGC
CGGTGCTGAAAAAGTACTGACGAGACTCGCGAAGAAATATCCAATCTCGGTCATCGTCGTCGGAAACGGAACCGCCTCAC
GGGAGACGGAACAATTCGTCGCCGACTGGTTGAAGAAAGCGGAACGTGACATTGCTTACGCGATTGTGAATGAAGCGGGA
GCAAGTGTCTACTCGGCATCGGAAGTCGCACGAAGTGAATTCCCGGATTTGAAAGTCGAGGAACGGTCAGCCGTCTCGAT
TGCACGCCGAATTCAGGACGCGATGGCGGAACTTGTCAAAGTCGACCCGCAATCAGTCGGTGTCGGACAATATCAGCATG
ACGTCAGCCAGAATAAACTGAAAGCCTCCTTAGAGTTCGTCGTCGAGAGCGTGGTCAACATGGTCGGAATTGATGTGAAC
CGTGCTTCCGAGTCTTTATTGACGTACGTCTCAGGACTCAATAAGACGACGGCGAAAAATATTGTGGCATATCGTGAAGA
GAATGGACGCTTTGAAACGAGAAAGGAAATTAAGAAAGTACCTCGTCTCGGAGCGAAGGCGTTTGAACAGGCGGCTGGAT
TCTTACGGATCATGAACGGGAAAGACGTTCTCGACCAGACGGAGATCCACCCAGAAAGCTATCCACTCGCGTTATCGATT
TTAAAAGAGATCGGTTCTTCAAAGTCAGAGGTCGGCACGGCCGCGCTTCGAGAACGATTGCAACAAGTCGATGCCAAAGC
TTTGAGTGAACAACTAGAAGCGGGACTTCCGACAGTCGAAGACATTTTGAAATCATTAGCCAAACCAGGTCGTGACCCAC
GAGAAGATATCCAGAAACCATTACTACGCACGGACGTCATGAGTCTCGAAGACCTTCAAGTCGGCATGGAATTCCAAGGA
ACCGTCCGAAACGTCATTGATTTTGGTGCGTTCGTAGACATTGGGGTGAAGCAAGATGGTTTGGTCCACATTTCGAAATT
ATCGAATCGATACGTGAAGCATCCATTAGATGTCGTGGCGGTTGGTGACATCGTGACCGTATGGATCGAACAGGTCGATG
TGAATCGGGGACGAATTAGTTTAACGATGCTTGCACCGAACGTTAAATAA

Upstream 100 bases:

>100_bases
ACTCAATGAAGTATTCTCAAGCGATGACTAATCGAGTCATCGCTTTTTTGTTTGAATGTTTGCTACACTTTGAAAGAGAT
CAAAAAAGGAAGTGATTCAA

Downstream 100 bases:

>100_bases
GAAGAAACTCGAATCAGGTAAAATGTTTTTCATTTTACCTGATTTTTTTTAGAAAAAGTGTTGACGGTCTTTTTTCACCG
TGTTATCTTATAGAAGTCGC

Product: RNA binding S1 domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 709; Mature: 709

Protein sequence:

>709_residues
MITKVANALNLKVNQVETVQQLASEGATIPFMARYRKEMTGNLDEVEIKGILDALQYEESLQKRKADVLAKLEELEKNTP
ELTKALEAATTLQQVEDIYLPYRPKRRTKAEQGREKGLQPLADWFRDKSPYSLDEVKELSQDVEVEEALPLVHAIIGEEW
GEEAKLRQMLRDRVRKEGLLRSKKKKQAEDEKEIFAQYYEYEEKIAGIVPHRVLALNRGERTDVLQVKVVFDESRFMDQA
LRTYERLPKEKREVVEAAVTEAYKKSVFPAIEREIRGELTEKAEEQAIDVFSKNLKQLYMQPPLREVVVLGIDPAYRTGC
KWAVVNEIGKVEEVGVFYPTAPKHDIAGAEKVLTRLAKKYPISVIVVGNGTASRETEQFVADWLKKAERDIAYAIVNEAG
ASVYSASEVARSEFPDLKVEERSAVSIARRIQDAMAELVKVDPQSVGVGQYQHDVSQNKLKASLEFVVESVVNMVGIDVN
RASESLLTYVSGLNKTTAKNIVAYREENGRFETRKEIKKVPRLGAKAFEQAAGFLRIMNGKDVLDQTEIHPESYPLALSI
LKEIGSSKSEVGTAALRERLQQVDAKALSEQLEAGLPTVEDILKSLAKPGRDPREDIQKPLLRTDVMSLEDLQVGMEFQG
TVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDVNRGRISLTMLAPNVK

Sequences:

>Translated_709_residues
MITKVANALNLKVNQVETVQQLASEGATIPFMARYRKEMTGNLDEVEIKGILDALQYEESLQKRKADVLAKLEELEKNTP
ELTKALEAATTLQQVEDIYLPYRPKRRTKAEQGREKGLQPLADWFRDKSPYSLDEVKELSQDVEVEEALPLVHAIIGEEW
GEEAKLRQMLRDRVRKEGLLRSKKKKQAEDEKEIFAQYYEYEEKIAGIVPHRVLALNRGERTDVLQVKVVFDESRFMDQA
LRTYERLPKEKREVVEAAVTEAYKKSVFPAIEREIRGELTEKAEEQAIDVFSKNLKQLYMQPPLREVVVLGIDPAYRTGC
KWAVVNEIGKVEEVGVFYPTAPKHDIAGAEKVLTRLAKKYPISVIVVGNGTASRETEQFVADWLKKAERDIAYAIVNEAG
ASVYSASEVARSEFPDLKVEERSAVSIARRIQDAMAELVKVDPQSVGVGQYQHDVSQNKLKASLEFVVESVVNMVGIDVN
RASESLLTYVSGLNKTTAKNIVAYREENGRFETRKEIKKVPRLGAKAFEQAAGFLRIMNGKDVLDQTEIHPESYPLALSI
LKEIGSSKSEVGTAALRERLQQVDAKALSEQLEAGLPTVEDILKSLAKPGRDPREDIQKPLLRTDVMSLEDLQVGMEFQG
TVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDVNRGRISLTMLAPNVK
>Mature_709_residues
MITKVANALNLKVNQVETVQQLASEGATIPFMARYRKEMTGNLDEVEIKGILDALQYEESLQKRKADVLAKLEELEKNTP
ELTKALEAATTLQQVEDIYLPYRPKRRTKAEQGREKGLQPLADWFRDKSPYSLDEVKELSQDVEVEEALPLVHAIIGEEW
GEEAKLRQMLRDRVRKEGLLRSKKKKQAEDEKEIFAQYYEYEEKIAGIVPHRVLALNRGERTDVLQVKVVFDESRFMDQA
LRTYERLPKEKREVVEAAVTEAYKKSVFPAIEREIRGELTEKAEEQAIDVFSKNLKQLYMQPPLREVVVLGIDPAYRTGC
KWAVVNEIGKVEEVGVFYPTAPKHDIAGAEKVLTRLAKKYPISVIVVGNGTASRETEQFVADWLKKAERDIAYAIVNEAG
ASVYSASEVARSEFPDLKVEERSAVSIARRIQDAMAELVKVDPQSVGVGQYQHDVSQNKLKASLEFVVESVVNMVGIDVN
RASESLLTYVSGLNKTTAKNIVAYREENGRFETRKEIKKVPRLGAKAFEQAAGFLRIMNGKDVLDQTEIHPESYPLALSI
LKEIGSSKSEVGTAALRERLQQVDAKALSEQLEAGLPTVEDILKSLAKPGRDPREDIQKPLLRTDVMSLEDLQVGMEFQG
TVRNVIDFGAFVDIGVKQDGLVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDVNRGRISLTMLAPNVK

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=789, Percent_Identity=33.8403041825095, Blast_Score=405, Evalue=1e-113,
Organism=Homo sapiens, GI27597090, Length=402, Percent_Identity=26.3681592039801, Blast_Score=90, Evalue=6e-18,
Organism=Escherichia coli, GI87082262, Length=718, Percent_Identity=42.0612813370474, Blast_Score=523, Evalue=1e-149,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=49.3333333333333, Blast_Score=76, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=738, Percent_Identity=30.2168021680217, Blast_Score=266, Evalue=3e-71,
Organism=Caenorhabditis elegans, GI17552892, Length=310, Percent_Identity=27.0967741935484, Blast_Score=83, Evalue=5e-16,
Organism=Saccharomyces cerevisiae, GI6321552, Length=227, Percent_Identity=27.7533039647577, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI62484314, Length=735, Percent_Identity=34.0136054421769, Blast_Score=381, Evalue=1e-105,
Organism=Drosophila melanogaster, GI24640080, Length=456, Percent_Identity=23.9035087719298, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 79754; Mature: 79754

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITKVANALNLKVNQVETVQQLASEGATIPFMARYRKEMTGNLDEVEIKGILDALQYEES
CCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LQKRKADVLAKLEELEKNTPELTKALEAATTLQQVEDIYLPYRPKRRTKAEQGREKGLQP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHH
LADWFRDKSPYSLDEVKELSQDVEVEEALPLVHAIIGEEWGEEAKLRQMLRDRVRKEGLL
HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RSKKKKQAEDEKEIFAQYYEYEEKIAGIVPHRVLALNRGERTDVLQVKVVFDESRFMDQA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCEEEEEEEECHHHHHHHH
LRTYERLPKEKREVVEAAVTEAYKKSVFPAIEREIRGELTEKAEEQAIDVFSKNLKQLYM
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPPLREVVVLGIDPAYRTGCKWAVVNEIGKVEEVGVFYPTAPKHDIAGAEKVLTRLAKKY
CCCHHHEEEECCCHHHHCCCCHHHHHHCCCHHHCCEECCCCCCCCCCCHHHHHHHHHHHC
PISVIVVGNGTASRETEQFVADWLKKAERDIAYAIVNEAGASVYSASEVARSEFPDLKVE
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
ERSAVSIARRIQDAMAELVKVDPQSVGVGQYQHDVSQNKLKASLEFVVESVVNMVGIDVN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RASESLLTYVSGLNKTTAKNIVAYREENGRFETRKEIKKVPRLGAKAFEQAAGFLRIMNG
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHEEECCC
KDVLDQTEIHPESYPLALSILKEIGSSKSEVGTAALRERLQQVDAKALSEQLEAGLPTVE
CCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
DILKSLAKPGRDPREDIQKPLLRTDVMSLEDLQVGMEFQGTVRNVIDFGAFVDIGVKQDG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCCCC
LVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDVNRGRISLTMLAPNVK
CCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCEEEEEEECCCCC
>Mature Secondary Structure
MITKVANALNLKVNQVETVQQLASEGATIPFMARYRKEMTGNLDEVEIKGILDALQYEES
CCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
LQKRKADVLAKLEELEKNTPELTKALEAATTLQQVEDIYLPYRPKRRTKAEQGREKGLQP
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCHH
LADWFRDKSPYSLDEVKELSQDVEVEEALPLVHAIIGEEWGEEAKLRQMLRDRVRKEGLL
HHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
RSKKKKQAEDEKEIFAQYYEYEEKIAGIVPHRVLALNRGERTDVLQVKVVFDESRFMDQA
HHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCEEEEEEEECHHHHHHHH
LRTYERLPKEKREVVEAAVTEAYKKSVFPAIEREIRGELTEKAEEQAIDVFSKNLKQLYM
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QPPLREVVVLGIDPAYRTGCKWAVVNEIGKVEEVGVFYPTAPKHDIAGAEKVLTRLAKKY
CCCHHHEEEECCCHHHHCCCCHHHHHHCCCHHHCCEECCCCCCCCCCCHHHHHHHHHHHC
PISVIVVGNGTASRETEQFVADWLKKAERDIAYAIVNEAGASVYSASEVARSEFPDLKVE
CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC
ERSAVSIARRIQDAMAELVKVDPQSVGVGQYQHDVSQNKLKASLEFVVESVVNMVGIDVN
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
RASESLLTYVSGLNKTTAKNIVAYREENGRFETRKEIKKVPRLGAKAFEQAAGFLRIMNG
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHEEECCC
KDVLDQTEIHPESYPLALSILKEIGSSKSEVGTAALRERLQQVDAKALSEQLEAGLPTVE
CCHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
DILKSLAKPGRDPREDIQKPLLRTDVMSLEDLQVGMEFQGTVRNVIDFGAFVDIGVKQDG
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCEECCCCCCC
LVHISKLSNRYVKHPLDVVAVGDIVTVWIEQVDVNRGRISLTMLAPNVK
CCHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHCCCCCEEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]