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The map label for this gene is abrB [H]

Identifier: 229917423

GI number: 229917423

Start: 1649829

End: 1650122

Strand: Direct

Name: abrB [H]

Synonym: EAT1b_1698

Alternate gene names: 229917423

Gene position: 1649829-1650122 (Clockwise)

Preceding gene: 229917305

Following gene: 229917438

Centisome position: 55.0

GC content: 41.16

Gene sequence:

>294_bases
ATGAAATCTACAGGTATTGTACGTAAGGTTGATGAGCTTGGTCGTGTCGTTATTCCAATCGAATTGCGTCGTACACTCGG
TATCGCAGAGAAAGATGCTCTCGAGATTTACGTCGACAACGATCAAATCGTTTTGAAAAAATATAAGCCAAACATGACTT
GCCAAGTTACAGGCGAAGTATCAGATGATAACTTCAAATTGGCAGACGGCAAACTCATCTTGTCACCAGAAGGTGCACAA
CGTGTTCTCGTTGAATTGAAGAACATGCTCGAAAATTACTACAGCGAAGAGTAA

Upstream 100 bases:

>100_bases
ATTGGAAAGTTTAGTATGCTTTTTGCTGTAGTCACATTGTCGAATTTTGACGATTCATGTCACCACGAGATTTCGACATC
ATTGGAGGAGGAAACACAAA

Downstream 100 bases:

>100_bases
GCAAGGATTTCCTTGCCTACTCTTTTTTATGCAACTGATGATACGCATCGTATACATCGTTCCGAGATTCGCCACGGTCT
TTCGCAGTCTGTTTGATTGC

Product: AbrB family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDNDQIVLKKYKPNMTCQVTGEVSDDNFKLADGKLILSPEGAQ
RVLVELKNMLENYYSEE

Sequences:

>Translated_97_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDNDQIVLKKYKPNMTCQVTGEVSDDNFKLADGKLILSPEGAQ
RVLVELKNMLENYYSEE
>Mature_97_residues
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDNDQIVLKKYKPNMTCQVTGEVSDDNFKLADGKLILSPEGAQ
RVLVELKNMLENYYSEE

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 11000; Mature: 11000

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDNDQIVLKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECC
SDDNFKLADGKLILSPEGAQRVLVELKNMLENYYSEE
CCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDNDQIVLKKYKPNMTCQVTGEV
CCCCCHHHHHHHCCCEEEEEEEHHHCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECC
SDDNFKLADGKLILSPEGAQRVLVELKNMLENYYSEE
CCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]