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The map label for this gene is yabR [H]

Identifier: 229917405

GI number: 229917405

Start: 1630430

End: 1630942

Strand: Reverse

Name: yabR [H]

Synonym: EAT1b_1680

Alternate gene names: 229917405

Gene position: 1630942-1630430 (Counterclockwise)

Preceding gene: 229917406

Following gene: 229917404

Centisome position: 54.37

GC content: 53.02

Gene sequence:

>513_bases
ATGTCAATTGAAGTAGGAAGCAAGGTACAAGGTAAGGTTACAGGGATTACGCATTTCGGAGCGTTCGTCGAGCTCCCAAA
TGGCAAGACAGGATTAGTACACATCAGTGAAGTGGCAGACTCTTACGTCAAAGACATTAACGAAGTGTTGACTGTCGGTC
AAGAAGTCACGGTAAAAGTGTTGAACGTCGAAAATGATGGGAAAATCGGGTTGTCCATCAAGAAAGCAGTCGACCGTCCT
GTAAGCGAACGTCCTGAGCGTCCTGAGCGTCCAGCTGGTGAGCGTTTCTCTCGTGGCCCACGTCCAGGCGGCCCAGGTCA
AGGTGGTCCACGCGGCGGCGGCGGTCCACGCGGTGGTGGCCCACGTGGTGGCGGTCGTCGTGAACAACGTCGCGAACCAG
AAACATTCGATACATTGATGAGTAAGTTCTTGAAAGATAGCGACGAGCGTCTTTCGACGTTAAAACGTCAAACAGACTCA
AAACGCGGTGGACGCGGAGCCAAGCGCGGGTAA

Upstream 100 bases:

>100_bases
TTTTCTACTTCTCCCCAGAGGAATAAGTCGGTTCGTTGACCGTTAGGGAAACGACTCGTATAATTAGGAAGAATCAATCA
AAAAAGGAGTACATTATTTT

Downstream 100 bases:

>100_bases
TCCTTCGTATACCAATTAGCTTCTACTCGTAACCATAGAGGTCTTGTAATGAGACGAGCCATGAACATTTTCGTTCATGG
CTTTTTTTCTGTTTAAAAAA

Product: RNA binding S1 domain protein

Products: RNAn; a nucleoside diphosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSIEVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNVENDGKIGLSIKKAVDRP
VSERPERPERPAGERFSRGPRPGGPGQGGPRGGGGPRGGGPRGGGRREQRREPETFDTLMSKFLKDSDERLSTLKRQTDS
KRGGRGAKRG

Sequences:

>Translated_170_residues
MSIEVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNVENDGKIGLSIKKAVDRP
VSERPERPERPAGERFSRGPRPGGPGQGGPRGGGGPRGGGPRGGGRREQRREPETFDTLMSKFLKDSDERLSTLKRQTDS
KRGGRGAKRG
>Mature_169_residues
SIEVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKVLNVENDGKIGLSIKKAVDRPV
SERPERPERPAGERFSRGPRPGGPGQGGPRGGGGPRGGGPRGGGRREQRREPETFDTLMSKFLKDSDERLSTLKRQTDSK
RGGRGAKRG

Specific function: Involved In Mrna Degradation. Hydrolyzes Single-Stranded Polyribonucleotides Processively In The 3' To 5' Direction. Involved In The RNA Degradosome, A Multi-Enzyme Complex Important In RNA Processing And Messenger RNA Degradation. [C]

COG id: COG1098

COG function: function code J; Predicted RNA binding protein (contains ribosomal protein S1 domain)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI145693187, Length=77, Percent_Identity=54.5454545454545, Blast_Score=77, Evalue=5e-16,

Paralogues:

None

Copy number: 200 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1000 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 3328 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 3,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967 [H]

Pfam domain/function: PF00575 S1 [H]

EC number: 2.7.7.8 [C]

Molecular weight: Translated: 18198; Mature: 18067

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIEVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKV
CCCCCCCCCCCEECEEEECCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
LNVENDGKIGLSIKKAVDRPVSERPERPERPAGERFSRGPRPGGPGQGGPRGGGGPRGGG
EEECCCCCCCEEHHHHHCCCHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
PRGGGRREQRREPETFDTLMSKFLKDSDERLSTLKRQTDSKRGGRGAKRG
CCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SIEVGSKVQGKVTGITHFGAFVELPNGKTGLVHISEVADSYVKDINEVLTVGQEVTVKV
CCCCCCCCCCEECEEEECCEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCEEEEE
LNVENDGKIGLSIKKAVDRPVSERPERPERPAGERFSRGPRPGGPGQGGPRGGGGPRGGG
EEECCCCCCCEEHHHHHCCCHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCC
PRGGGRREQRREPETFDTLMSKFLKDSDERLSTLKRQTDSKRGGRGAKRG
CCCCCCCHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): 4500 [C]

Specific activity: NA

Km value (mM): NA

Substrates: RNAn+1; phosphate [C]

Specific reaction: RNAn+1 + phosphate = RNAn + a nucleoside diphosphate [C]

General reaction: Nucleotidyl group transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8113187; 7584024; 9384377 [H]