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The map label for this gene is ctsR [H]

Identifier: 229917389

GI number: 229917389

Start: 1607533

End: 1608009

Strand: Reverse

Name: ctsR [H]

Synonym: EAT1b_1664

Alternate gene names: 229917389

Gene position: 1608009-1607533 (Counterclockwise)

Preceding gene: 229917390

Following gene: 229917388

Centisome position: 53.6

GC content: 40.25

Gene sequence:

>477_bases
ATGAGAAATATTTCGGATGTCATCGAACAGTATTTGAAGCAAGTCTTGAAGGAAAGTCAGGCAAATGCGATTGAAATCAA
ACGTCAAGATATCGCACAACGATTCGAATGTGTCCCATCCCAAATCAATTACGTCATCAACACACGTTTTACCGTCGAAA
AAGGATATTTAGTAGAAAGTAAACGTGGCGGTGGCGGATATATTCGTATTCGACGCGTCATTTTACACGAAAAACAAGAT
GTTCTCTCTAGTTTGATGGATGTCATTCATGAACATCCACGTTTGAACGAACAGCTCGTTGAAAATGTGCTGATTCGATT
GGTTGAAGAACAGATGATGCACGAACAAGAGGCGCAGTTGATTTATCATCTCTTATCAGATGAAGCATTGAACTTACAAG
TTGACGATCGCTCCTATATTCGACGTCAACAACTACTCGCGCTGATGAAAGTACTTCGTTATCGTAATGGAGGGTAA

Upstream 100 bases:

>100_bases
AGCGATGCTCTCGAACGAGAGACATCGCTTTTCGTTTGCCTTTTTTTAAATCAATGATAAAATATAGTCAAAAGTCAAAG
ATGGTCAGAGGGTGGTGGAG

Downstream 100 bases:

>100_bases
GTCGTATGCTATGCGAACGTTGTAAACAGCGACCGGCTGTCAATGAAGTCGTTGTCATGGAACAGGACGTGCCCGTAAAA
AAACGGCTATGTCGACAATG

Product: transcriptional repressor, CtsR

Products: NA

Alternate protein names: Class three stress gene repressor [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MRNISDVIEQYLKQVLKESQANAIEIKRQDIAQRFECVPSQINYVINTRFTVEKGYLVESKRGGGGYIRIRRVILHEKQD
VLSSLMDVIHEHPRLNEQLVENVLIRLVEEQMMHEQEAQLIYHLLSDEALNLQVDDRSYIRRQQLLALMKVLRYRNGG

Sequences:

>Translated_158_residues
MRNISDVIEQYLKQVLKESQANAIEIKRQDIAQRFECVPSQINYVINTRFTVEKGYLVESKRGGGGYIRIRRVILHEKQD
VLSSLMDVIHEHPRLNEQLVENVLIRLVEEQMMHEQEAQLIYHLLSDEALNLQVDDRSYIRRQQLLALMKVLRYRNGG
>Mature_158_residues
MRNISDVIEQYLKQVLKESQANAIEIKRQDIAQRFECVPSQINYVINTRFTVEKGYLVESKRGGGGYIRIRRVILHEKQD
VLSSLMDVIHEHPRLNEQLVENVLIRLVEEQMMHEQEAQLIYHLLSDEALNLQVDDRSYIRRQQLLALMKVLRYRNGG

Specific function: Controls the expression of the cellular protein quality control genes clpC, clpE and clpP. Acts as a repressor of these class III stress genes by binding to a directly repeated heptanucleotide operator sequence (A/GGTCAAA NAN A/GGTCAAA). After heat shock,

COG id: COG4463

COG function: function code K; Transcriptional repressor of class III stress genes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CtsR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008463 [H]

Pfam domain/function: PF05848 CtsR [H]

EC number: NA

Molecular weight: Translated: 18630; Mature: 18630

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNISDVIEQYLKQVLKESQANAIEIKRQDIAQRFECVPSQINYVINTRFTVEKGYLVES
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCEEEEECCEEEEC
KRGGGGYIRIRRVILHEKQDVLSSLMDVIHEHPRLNEQLVENVLIRLVEEQMMHEQEAQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYHLLSDEALNLQVDDRSYIRRQQLLALMKVLRYRNGG
HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRNISDVIEQYLKQVLKESQANAIEIKRQDIAQRFECVPSQINYVINTRFTVEKGYLVES
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCEEEEECCEEEEC
KRGGGGYIRIRRVILHEKQDVLSSLMDVIHEHPRLNEQLVENVLIRLVEEQMMHEQEAQL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
IYHLLSDEALNLQVDDRSYIRRQQLLALMKVLRYRNGG
HHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]