| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
Click here to switch to the map view.
The map label for this gene is 229917287
Identifier: 229917287
GI number: 229917287
Start: 1517946
End: 1519013
Strand: Reverse
Name: 229917287
Synonym: EAT1b_1562
Alternate gene names: NA
Gene position: 1519013-1517946 (Counterclockwise)
Preceding gene: 229917288
Following gene: 229917286
Centisome position: 50.64
GC content: 52.15
Gene sequence:
>1068_bases ATGAGATGGATGATTTATGGGGCGAATGGCTATACGGGTGAGCTGGTTGCCCGACAAGCCGTTCGTGACGGAATGCGTCC GGTTCTTGCCGGACGAAACGCAAGAGCGATTCATCGCCTAGGAGATGAACTGGGTTGCGAGACATCGATTTTTGCATTGA GTCGTGAAGCCGCAATCGAGGCGCTTCACGATGTGGATTTAGTCCTTCATTGTGCAGGTCCTTTCACGGATACGAGCCAA ATGATGATCGAGGCATGTCTAGAGACAGGTACGCATTACTTAGATATTACCGGGGAAATCGACGTGTTCGAATATGTCCA TTCTAAACAGCGAGCGACTCAAGCCAAAGAACGTGGTGTGATTTTATGCTCGGGTGTCGGATTTGATGTCATTCCGACTG ACTGTGTCGCGCGGAAATTAAAAGAGTTGATACCGGATGCGACAACACTCGCTCTTGGCTTTTCGGCGGCAGCCGGCATC TCACCAGGAACCATGAAGACGGCCGTTCGTGGACTAGGGTCGAGTAGTGTGGAACGTGTGAACGGCAAATTATCACCATT TCCAATTGGGGCAAAGCGGAGAACGATTGATTTTGGTCGCGGAAGCCGTACCGCGATTGCGATTCCGTGGGGAGATGTTT CGACCGCCTACTACACGACGGACATTCCGAATATTACGACATGGGTACCAGTGCCGACAGCGGCCGCCTATGCTGCTCGC GCTTTGTCATGGTTCAGCCCGATTCTCGGAAAAGAGGCCGTGCAGGAACGATTGCTCCGTTATGTCGACGAAAACGTATC GGGACCAGACGAGGCTGTACGTGAAAAATCATCGACGTACGTATGGGGCGAAGCAACGAATGAGGAAGGACGAAAAGTAG TCGTCCGTATTCAAACGGCAAGTACGTATGCCTTCACCGTGTACGGGGCGCTCGCCGTCGTCAAGCGGTTGCTCGGTTCG GGTGGGATGCTTGCCGGAAGCTTCACACCAGCCATGCTATTCGGATCTCACTTTATCGAAGAGATTCAAGGTTCCTCTTC GTTCGTGATTGATGAGATTCGTCCATGA
Upstream 100 bases:
>100_bases GGAAGTGTGTATATCATCGATGTCATCCAAGAATTTTTCGTTCGATTCAACTTCTTTTAGGGAAACGAACAAGGACACAT TGACATAAGGAGGAGTAAAA
Downstream 100 bases:
>100_bases ATCGAGAAGTATGGGATTTACTCGACGAAAATCGGCAACCGCTCGGTCGAACGCACTTTCGTGGGGATGAACTAGAGCCA CATACGTTTCATACGGTCAT
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: Integral Membrane Protein; Saccharopine Dehydrogenase Family Protein; UbiD Family Decarboxylase
Number of amino acids: Translated: 355; Mature: 355
Protein sequence:
>355_residues MRWMIYGANGYTGELVARQAVRDGMRPVLAGRNARAIHRLGDELGCETSIFALSREAAIEALHDVDLVLHCAGPFTDTSQ MMIEACLETGTHYLDITGEIDVFEYVHSKQRATQAKERGVILCSGVGFDVIPTDCVARKLKELIPDATTLALGFSAAAGI SPGTMKTAVRGLGSSSVERVNGKLSPFPIGAKRRTIDFGRGSRTAIAIPWGDVSTAYYTTDIPNITTWVPVPTAAAYAAR ALSWFSPILGKEAVQERLLRYVDENVSGPDEAVREKSSTYVWGEATNEEGRKVVVRIQTASTYAFTVYGALAVVKRLLGS GGMLAGSFTPAMLFGSHFIEEIQGSSSFVIDEIRP
Sequences:
>Translated_355_residues MRWMIYGANGYTGELVARQAVRDGMRPVLAGRNARAIHRLGDELGCETSIFALSREAAIEALHDVDLVLHCAGPFTDTSQ MMIEACLETGTHYLDITGEIDVFEYVHSKQRATQAKERGVILCSGVGFDVIPTDCVARKLKELIPDATTLALGFSAAAGI SPGTMKTAVRGLGSSSVERVNGKLSPFPIGAKRRTIDFGRGSRTAIAIPWGDVSTAYYTTDIPNITTWVPVPTAAAYAAR ALSWFSPILGKEAVQERLLRYVDENVSGPDEAVREKSSTYVWGEATNEEGRKVVVRIQTASTYAFTVYGALAVVKRLLGS GGMLAGSFTPAMLFGSHFIEEIQGSSSFVIDEIRP >Mature_355_residues MRWMIYGANGYTGELVARQAVRDGMRPVLAGRNARAIHRLGDELGCETSIFALSREAAIEALHDVDLVLHCAGPFTDTSQ MMIEACLETGTHYLDITGEIDVFEYVHSKQRATQAKERGVILCSGVGFDVIPTDCVARKLKELIPDATTLALGFSAAAGI SPGTMKTAVRGLGSSSVERVNGKLSPFPIGAKRRTIDFGRGSRTAIAIPWGDVSTAYYTTDIPNITTWVPVPTAAAYAAR ALSWFSPILGKEAVQERLLRYVDENVSGPDEAVREKSSTYVWGEATNEEGRKVVVRIQTASTYAFTVYGALAVVKRLLGS GGMLAGSFTPAMLFGSHFIEEIQGSSSFVIDEIRP
Specific function: Unknown
COG id: COG3268
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI55770836, Length=221, Percent_Identity=27.1493212669683, Blast_Score=74, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17560066, Length=226, Percent_Identity=24.7787610619469, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI32567112, Length=226, Percent_Identity=24.7787610619469, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24646278, Length=143, Percent_Identity=31.4685314685315, Blast_Score=75, Evalue=5e-14, Organism=Drosophila melanogaster, GI24644140, Length=145, Percent_Identity=31.7241379310345, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI24644142, Length=145, Percent_Identity=31.7241379310345, Blast_Score=72, Evalue=6e-13, Organism=Drosophila melanogaster, GI21356081, Length=145, Percent_Identity=31.7241379310345, Blast_Score=72, Evalue=6e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38319; Mature: 38319
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRWMIYGANGYTGELVARQAVRDGMRPVLAGRNARAIHRLGDELGCETSIFALSREAAIE CEEEEECCCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH ALHDVDLVLHCAGPFTDTSQMMIEACLETGTHYLDITGEIDVFEYVHSKQRATQAKERGV HHHHHEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCE ILCSGVGFDVIPTDCVARKLKELIPDATTLALGFSAAAGISPGTMKTAVRGLGSSSVERV EEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH NGKLSPFPIGAKRRTIDFGRGSRTAIAIPWGDVSTAYYTTDIPNITTWVPVPTAAAYAAR CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEECCCCCCEEEECCCHHHHHHHH ALSWFSPILGKEAVQERLLRYVDENVSGPDEAVREKSSTYVWGEATNEEGRKVVVRIQTA HHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEECCCCCCCCEEEEEEEEC STYAFTVYGALAVVKRLLGSGGMLAGSFTPAMLFGSHFIEEIQGSSSFVIDEIRP CEEHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCC >Mature Secondary Structure MRWMIYGANGYTGELVARQAVRDGMRPVLAGRNARAIHRLGDELGCETSIFALSREAAIE CEEEEECCCCCCHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH ALHDVDLVLHCAGPFTDTSQMMIEACLETGTHYLDITGEIDVFEYVHSKQRATQAKERGV HHHHHEEEEEECCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCE ILCSGVGFDVIPTDCVARKLKELIPDATTLALGFSAAAGISPGTMKTAVRGLGSSSVERV EEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHH NGKLSPFPIGAKRRTIDFGRGSRTAIAIPWGDVSTAYYTTDIPNITTWVPVPTAAAYAAR CCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCCEEEECCCCCCEEEECCCHHHHHHHH ALSWFSPILGKEAVQERLLRYVDENVSGPDEAVREKSSTYVWGEATNEEGRKVVVRIQTA HHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHCCCCEEEEECCCCCCCCEEEEEEEEC STYAFTVYGALAVVKRLLGSGGMLAGSFTPAMLFGSHFIEEIQGSSSFVIDEIRP CEEHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA