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The map label for this gene is nudB [C]

Identifier: 229917286

GI number: 229917286

Start: 1517452

End: 1517949

Strand: Reverse

Name: nudB [C]

Synonym: EAT1b_1561

Alternate gene names: 229917286

Gene position: 1517949-1517452 (Counterclockwise)

Preceding gene: 229917287

Following gene: 229917285

Centisome position: 50.6

GC content: 50.6

Gene sequence:

>498_bases
ATGAATCGAGAAGTATGGGATTTACTCGACGAAAATCGGCAACCGCTCGGTCGAACGCACTTTCGTGGGGATGAACTAGA
GCCACATACGTTTCATACGGTCATCGAAGTGTTCACGTTCGATCCGGATGGGAGATTATTGCTGTCGAAGCGTCATCCGG
ATAAGACGTATCCGCTTCTGTGGGAAGGGACGGGCGGCTCGATTTTGGCTGGGGAAACGAGTCGACAAGGCGCGGTCCGT
GAGCTAAAAGAAGAGTTGGGACTATATGTATTGCCTGAGCAACTCCGGTTCGTGACAACGATTAAGCGGGGCACATATTT
CTTGGATATGTATTGTCTCGTGTGCGAGAAACCAATCGACTTCGAACGACTGTCACTGCAAGCAGATGAAGTCGTCGATG
TGACGTTACAAGAGTGGGAGACGGTCCTTGAGTGTGTAGAACTTGTTCCTTCTGTCCGGGAACGGCTGATTCAATACGGT
CATCTCATCCGACCGTGA

Upstream 100 bases:

>100_bases
GGATGCTTGCCGGAAGCTTCACACCAGCCATGCTATTCGGATCTCACTTTATCGAAGAGATTCAAGGTTCCTCTTCGTTC
GTGATTGATGAGATTCGTCC

Downstream 100 bases:

>100_bases
ACATGTGCTACACTCAACATAGAATATACAAGGGAGGGAACAGCGTGAAACGTTTAGAATTGGCAAGGCGTATCGAACGC
ATCAAAGCAGAGGGGACGTC

Product: NUDIX hydrolase

Products: dAMP; pyrophosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MNREVWDLLDENRQPLGRTHFRGDELEPHTFHTVIEVFTFDPDGRLLLSKRHPDKTYPLLWEGTGGSILAGETSRQGAVR
ELKEELGLYVLPEQLRFVTTIKRGTYFLDMYCLVCEKPIDFERLSLQADEVVDVTLQEWETVLECVELVPSVRERLIQYG
HLIRP

Sequences:

>Translated_165_residues
MNREVWDLLDENRQPLGRTHFRGDELEPHTFHTVIEVFTFDPDGRLLLSKRHPDKTYPLLWEGTGGSILAGETSRQGAVR
ELKEELGLYVLPEQLRFVTTIKRGTYFLDMYCLVCEKPIDFERLSLQADEVVDVTLQEWETVLECVELVPSVRERLIQYG
HLIRP
>Mature_165_residues
MNREVWDLLDENRQPLGRTHFRGDELEPHTFHTVIEVFTFDPDGRLLLSKRHPDKTYPLLWEGTGGSILAGETSRQGAVR
ELKEELGLYVLPEQLRFVTTIKRGTYFLDMYCLVCEKPIDFERLSLQADEVVDVTLQEWETVLECVELVPSVRERLIQYG
HLIRP

Specific function: Hydrolysis Of Nucleoside Triphosphates With A Preference For Datp. [C]

COG id: COG0494

COG function: function code LR; NTP pyrophosphohydrolases including oxidative damage repair enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: 3.6.1.- [C]

Molecular weight: Translated: 19255; Mature: 19255

Theoretical pI: Translated: 4.72; Mature: 4.72

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNREVWDLLDENRQPLGRTHFRGDELEPHTFHTVIEVFTFDPDGRLLLSKRHPDKTYPLL
CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEHEEECCCCCEEEECCCCCCCCCEE
WEGTGGSILAGETSRQGAVRELKEELGLYVLPEQLRFVTTIKRGTYFLDMYCLVCEKPID
EECCCCCEEECCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
FERLSLQADEVVDVTLQEWETVLECVELVPSVRERLIQYGHLIRP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNREVWDLLDENRQPLGRTHFRGDELEPHTFHTVIEVFTFDPDGRLLLSKRHPDKTYPLL
CCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHEEHEEECCCCCEEEECCCCCCCCCEE
WEGTGGSILAGETSRQGAVRELKEELGLYVLPEQLRFVTTIKRGTYFLDMYCLVCEKPID
EECCCCCEEECCCCCCHHHHHHHHHCCEEECHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
FERLSLQADEVVDVTLQEWETVLECVELVPSVRERLIQYGHLIRP
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: deoxy-ATP; H2O [C]

Specific reaction: deoxy-ATP + H2O = dAMP + pyrophosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]