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The map label for this gene is rbsC [H]

Identifier: 229917241

GI number: 229917241

Start: 1484895

End: 1485860

Strand: Reverse

Name: rbsC [H]

Synonym: EAT1b_1516

Alternate gene names: 229917241

Gene position: 1485860-1484895 (Counterclockwise)

Preceding gene: 229917242

Following gene: 229917240

Centisome position: 49.53

GC content: 51.86

Gene sequence:

>966_bases
ATGGAATTGAAAGCAACGACCGGACTGAAACGCCCGGGTCGACTCGGATGGGGGCAAAAACTAGGACCGCTGTTTGGTCT
GCTCGTCATCGTTGTCGTCGTGACGGCGCTTGAACCAGGATTTTTATCATTAAATAATATCTTCAACGTACTCCGCCAAG
TGTCGATCAATGCCTTGATTGCCTTCGGGATGACGTTTGTCATCTTGACAGGGGGAATCGATTTATCGGTCGGGTCGATT
TTGGCGCTCGCCTCTGCACTAGTGGCAGGCATGATGGTGGATGGTCAACATGCGGTTATGGCCGTCGCACTCGGCTTGAT
TGCAGGTGCCGTTCTCGGGGCCTTTAACGGGGCGGTCATCACGTACGGGAAAGTAGCACCGTTCATCGCGACATTGGCTA
CGATGACCATTTATCGGGGCTTGACGCTCGTTTATACAGACGGACGACCGATTACGGGTCTCGGGAATTCCGGTTGGTTC
GAGATGCTCGGACGCGGCTACTTCTGGATCATTCCAGTACCGGCATTGACGATGCTACTCGCATTCGGTGTCCTGTATTT
CATCTTGAAGAAGACCACATTTGGTCGTCACACGTACGCAATCGGTGGAAATGAAGAAGCGGCAAAATTAATGGGGATTG
GCGTCAATAAAGTCAAAATCATGATCTACTCTCTATCCGGTATGCTTGCAGCACTCGCCGGCATCATCTTGACATCGCGC
CTTAATTCCGCACAACCGACGGCAGGAACGTCATACGAACTCGATGCCATCGCAGCGGTCGTTCTCGGGGGAACGAGCCT
AGCGGGTGGTCGAGGTTGGATTGTCGGGACGTTGATCGGGGCGCTGATCATCGGAACGCTTAACAACGGATTGAACCTTC
TCGGCGTATCATCTTTCTTCCAACTCGTCGTAAAAGGTGCAGTTATATTGTTTGCAGTATTGCTTGATCGTCGACAAAAC
GCGTAA

Upstream 100 bases:

>100_bases
CGGATCGTCGTCATGCGAGAAGGTGTGGTGACCGGGACGCTCACGAAAGAAGAGGCGACACAGGAAAAAGTAATGACGTA
TGCGACAGGAGGGCAATGAT

Downstream 100 bases:

>100_bases
CACGCGAAAGGGGAAAACGGAACATGAAAAAATGGACAGCTTGGCTACTCGCACTGACTATGGTACTGATGGCAGCTTGC
TCGACTGAACAACCGGGGTC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 321; Mature: 321

Protein sequence:

>321_residues
MELKATTGLKRPGRLGWGQKLGPLFGLLVIVVVVTALEPGFLSLNNIFNVLRQVSINALIAFGMTFVILTGGIDLSVGSI
LALASALVAGMMVDGQHAVMAVALGLIAGAVLGAFNGAVITYGKVAPFIATLATMTIYRGLTLVYTDGRPITGLGNSGWF
EMLGRGYFWIIPVPALTMLLAFGVLYFILKKTTFGRHTYAIGGNEEAAKLMGIGVNKVKIMIYSLSGMLAALAGIILTSR
LNSAQPTAGTSYELDAIAAVVLGGTSLAGGRGWIVGTLIGALIIGTLNNGLNLLGVSSFFQLVVKGAVILFAVLLDRRQN
A

Sequences:

>Translated_321_residues
MELKATTGLKRPGRLGWGQKLGPLFGLLVIVVVVTALEPGFLSLNNIFNVLRQVSINALIAFGMTFVILTGGIDLSVGSI
LALASALVAGMMVDGQHAVMAVALGLIAGAVLGAFNGAVITYGKVAPFIATLATMTIYRGLTLVYTDGRPITGLGNSGWF
EMLGRGYFWIIPVPALTMLLAFGVLYFILKKTTFGRHTYAIGGNEEAAKLMGIGVNKVKIMIYSLSGMLAALAGIILTSR
LNSAQPTAGTSYELDAIAAVVLGGTSLAGGRGWIVGTLIGALIIGTLNNGLNLLGVSSFFQLVVKGAVILFAVLLDRRQN
A
>Mature_321_residues
MELKATTGLKRPGRLGWGQKLGPLFGLLVIVVVVTALEPGFLSLNNIFNVLRQVSINALIAFGMTFVILTGGIDLSVGSI
LALASALVAGMMVDGQHAVMAVALGLIAGAVLGAFNGAVITYGKVAPFIATLATMTIYRGLTLVYTDGRPITGLGNSGWF
EMLGRGYFWIIPVPALTMLLAFGVLYFILKKTTFGRHTYAIGGNEEAAKLMGIGVNKVKIMIYSLSGMLAALAGIILTSR
LNSAQPTAGTSYELDAIAAVVLGGTSLAGGRGWIVGTLIGALIIGTLNNGLNLLGVSSFFQLVVKGAVILFAVLLDRRQN
A

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=316, Percent_Identity=53.7974683544304, Blast_Score=288, Evalue=3e-79,
Organism=Escherichia coli, GI1788896, Length=306, Percent_Identity=41.8300653594771, Blast_Score=197, Evalue=7e-52,
Organism=Escherichia coli, GI1790524, Length=322, Percent_Identity=39.7515527950311, Blast_Score=195, Evalue=3e-51,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=41.85303514377, Blast_Score=187, Evalue=7e-49,
Organism=Escherichia coli, GI1789992, Length=343, Percent_Identity=34.6938775510204, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI87082395, Length=288, Percent_Identity=39.9305555555556, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1788471, Length=334, Percent_Identity=37.125748502994, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1787794, Length=315, Percent_Identity=32.0634920634921, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI145693214, Length=248, Percent_Identity=38.7096774193548, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1787793, Length=286, Percent_Identity=34.6153846153846, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33418; Mature: 33418

Theoretical pI: Translated: 10.48; Mature: 10.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELKATTGLKRPGRLGWGQKLGPLFGLLVIVVVVTALEPGFLSLNNIFNVLRQVSINALI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
AFGMTFVILTGGIDLSVGSILALASALVAGMMVDGQHAVMAVALGLIAGAVLGAFNGAVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
TYGKVAPFIATLATMTIYRGLTLVYTDGRPITGLGNSGWFEMLGRGYFWIIPVPALTMLL
EECHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCHHHHHCCCEEEEECHHHHHHHH
AFGVLYFILKKTTFGRHTYAIGGNEEAAKLMGIGVNKVKIMIYSLSGMLAALAGIILTSR
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
LNSAQPTAGTSYELDAIAAVVLGGTSLAGGRGWIVGTLIGALIIGTLNNGLNLLGVSSFF
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLVVKGAVILFAVLLDRRQNA
HHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MELKATTGLKRPGRLGWGQKLGPLFGLLVIVVVVTALEPGFLSLNNIFNVLRQVSINALI
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHH
AFGMTFVILTGGIDLSVGSILALASALVAGMMVDGQHAVMAVALGLIAGAVLGAFNGAVI
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEE
TYGKVAPFIATLATMTIYRGLTLVYTDGRPITGLGNSGWFEMLGRGYFWIIPVPALTMLL
EECHHHHHHHHHHHHHHHCCEEEEEECCCEEECCCCCCHHHHHCCCEEEEECHHHHHHHH
AFGVLYFILKKTTFGRHTYAIGGNEEAAKLMGIGVNKVKIMIYSLSGMLAALAGIILTSR
HHHHHHHHHHHCCCCCEEEEECCCCHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHHH
LNSAQPTAGTSYELDAIAAVVLGGTSLAGGRGWIVGTLIGALIIGTLNNGLNLLGVSSFF
CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
QLVVKGAVILFAVLLDRRQNA
HHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]