| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yshE [H]
Identifier: 229917140
GI number: 229917140
Start: 1385209
End: 1385622
Strand: Direct
Name: yshE [H]
Synonym: EAT1b_1414
Alternate gene names: 229917140
Gene position: 1385209-1385622 (Clockwise)
Preceding gene: 229917139
Following gene: 229917141
Centisome position: 46.18
GC content: 50.48
Gene sequence:
>414_bases ATGACATTCATCACACTCGATTCAATCTTAAGCTTCCTGGCCCACCTCGGGACAGGATTCGGTCTCATTCTCGCGGGACT CATCATCTTCGCACTAACGACCAAATATTCGGAACGCAAGTTAATCAAAGAAGGCAACATGGCTGTCGCGTTGAAACTTT GGGGGAAAGCACTAGGACTCGCCATCGTCATTTATACAGTCTGGGCGAACAGCGTCAACTTGCTCGATGCGTTCATCTGG GGACTCGTCGGTATCGCCGCCCAAGTATTGGCGTTCTGGACGTTTGAATACATCCTTACACCAGGCGTGAATTTAGAAAA AGAAGTCGAGAATGGCAACATGGCCATCGGTTTCAGCTTGTTCGCCGCATCACTCGTCGTCGGGATCATCGTCGCCGCGA GCTTGACGTACTAA
Upstream 100 bases:
>100_bases GACACCCATCCGCACTCGGCGTCCGCGCCGGCAGCATGATCACGAACAACCAATCTTATTACTTAGCCGTTGGCACACCT ATACAAAAGGAGACGAACTC
Downstream 100 bases:
>100_bases TCAAACACCCCATGCACGCATTTGCGAAGCATGGGGTGTTCGTATTTATAAAAGTCAGGAGGAACAATCATGTCGAAGCG AATCATCTTACTCACAATCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 137; Mature: 136
Protein sequence:
>137_residues MTFITLDSILSFLAHLGTGFGLILAGLIIFALTTKYSERKLIKEGNMAVALKLWGKALGLAIVIYTVWANSVNLLDAFIW GLVGIAAQVLAFWTFEYILTPGVNLEKEVENGNMAIGFSLFAASLVVGIIVAASLTY
Sequences:
>Translated_137_residues MTFITLDSILSFLAHLGTGFGLILAGLIIFALTTKYSERKLIKEGNMAVALKLWGKALGLAIVIYTVWANSVNLLDAFIW GLVGIAAQVLAFWTFEYILTPGVNLEKEVENGNMAIGFSLFAASLVVGIIVAASLTY >Mature_136_residues TFITLDSILSFLAHLGTGFGLILAGLIIFALTTKYSERKLIKEGNMAVALKLWGKALGLAIVIYTVWANSVNLLDAFIWG LVGIAAQVLAFWTFEYILTPGVNLEKEVENGNMAIGFSLFAASLVVGIIVAASLTY
Specific function: Unknown
COG id: COG3766
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0719 family [H]
Homologues:
Organism=Escherichia coli, GI1790627, Length=132, Percent_Identity=31.8181818181818, Blast_Score=61, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007140 [H]
Pfam domain/function: PF03994 DUF350 [H]
EC number: NA
Molecular weight: Translated: 14745; Mature: 14614
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFITLDSILSFLAHLGTGFGLILAGLIIFALTTKYSERKLIKEGNMAVALKLWGKALGL CCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHHHHHHHHHHH AIVIYTVWANSVNLLDAFIWGLVGIAAQVLAFWTFEYILTPGVNLEKEVENGNMAIGFSL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHH FAASLVVGIIVAASLTY HHHHHHHHHHHHHHCCC >Mature Secondary Structure TFITLDSILSFLAHLGTGFGLILAGLIIFALTTKYSERKLIKEGNMAVALKLWGKALGL CEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCEEEHHHHHHHHHHH AIVIYTVWANSVNLLDAFIWGLVGIAAQVLAFWTFEYILTPGVNLEKEVENGNMAIGFSL HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEHHHH FAASLVVGIIVAASLTY HHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8969504; 9384377 [H]