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The map label for this gene is ybbD [H]

Identifier: 229917128

GI number: 229917128

Start: 1372923

End: 1374872

Strand: Reverse

Name: ybbD [H]

Synonym: EAT1b_1402

Alternate gene names: 229917128

Gene position: 1374872-1372923 (Counterclockwise)

Preceding gene: 229917131

Following gene: 229917125

Centisome position: 45.83

GC content: 52.26

Gene sequence:

>1950_bases
ATGAACAAGGCACTGAATTGGACGGCAACACTCGGATTGACGACGGCATTGCTCGTCTCGTCGGTTCCAGCAGCAGACGC
GGTCGTGGCGGAAGGGACGCCGACGATGTCGATTGACCAGCGCGTCAACACGAAGCTAGAGTCGATGACGCTCGAACAAA
AAATCGGGCAGATGATCATGCCGGACTTCCGATTATGGAACGGGGCGAACCATACATCTCTTGCACCGGAAGTGGCGCGT
GTCATCGATCGTTTCGATCTCGGTGGAGTGATATTGTTTGCGGAGAACGTGAAGGAGACGGAACAGACGACGAAACTCGT
TCATGATTTGCAAGAAGTCGTGAAACAAGATGCCAGCAATGATATCCCGTTATTTGTCACGATCGACCAAGAGGGTGGGA
TTGTGACACGCCTTGGGACGGGAACGAATCTACCGGGGAATATGGCGCTCGGGGCCACACGTAACCGTCAATATGCCTAT
GATGCAGGGGAAATCATCGGTTCTGAATTGCACGCACTCGGGGTAAACGTGAACTTCGGACCAGTGTTAGACGTCAACAA
CAATCCAGGGAATCCGGTCATCGGCGTCCGTTCGTTTTCGAGCGATCCTGAACTAGTCGGTGAACTTGGTTCCGCGATGA
CACAAGGGATTCAAGATCAAGGTGTTGCCGCAACGGCGAAACATTTCCCAGGTCATGGGGATACGGCCGTCGACTCGCAC
TACGGGTTGCCGATTGTCGATAAATCACTCGACGAGTTACGCGGACTCGAGTTGTTACCGTTCAAACGCGCCATCACGGA
AGGGATTGACATGATCATGACGGCGCATATCGGGATGCCACAAATCGAGGACGAGGTCGTCGAATCGGAACGCGGCACGT
TCCCGCTCCCGGCGACGCTTTCGGACGATGTCATCACGGGAGTGCTTCGTGAGGAACTCGGATATGAAGGAATCGTGGTG
ACCGACGCACTCAACATGCAAGCCATCGCAGACAACTTTACGGAAGCAGAAGCGGTCATCAAAACGTTTGAAGCAGGGGT
AGACATCGCACTCATGCCAACGATTTTACGCTCAGAGGCGGATGTGATCAAACTCGAGGCAATCTTTGAGGAAGTCATTG
CGGCAGTGAAGGATGGACGTTTATCGGAGGCGACCATCGATGAATCAGTAGAACGTATTTTAAAACTGAAAGCAGAGCGT
GGCATTTGGGGAGAAACGATGGACTCCACGACGCTCGAGACAAAGCTCGCAGGAGCGAACGCAGTCGTAGGTAGTGCGGA
GCATAAAGCGAAGGAACGTGAAATCGCGGAAGCGGCTGTCACGCTCGTGAAGAACGAGAAGAAGACACTCCCATTTAAAC
CGAAAAAAGGGGACACAGTGCTCGTCTTGTCGCCAGCGAAAGACCAAACGGATAGCATGGTGAAAACGATCAAGTCACTA
GAAAAGAATGCAGGGAATATGAAAGACGTGAACGTCATCACGGCCAATTATTCAGCATCGACCCCACATCTAGAACAAAA
TCCGGCACTACGGCAACAAGTCGAAGCGGCTGACTATATCATCGTCGGTTCGAACGTGAACAACAGCGCCAAACTGAAGC
CGACGTCAGCTGATCATTACGTGCCGGCGGAGGTGTTCCGTTACGCAAACGAGACAGGGAAACAATCGGTTTTACTCAGT
TTGCGCAACCCATACGACATTGCCGTTCAACCGGATGCCCCCGCACATCTCTTAATCTATGGATTCAAAGGCGATCCGAA
CGGTCCAGATTCGGAGGCGGGCAACTTGAAGTCGGCTGGTCCGAACTTACCGGCAGGCATTCGTGCCATCTTCGGTGAAG
TGAAGCCACAAGGGAAGTTGCCGGTAGATGTACCGAAATTTGTGGACGGTGTATTCCAAGACGAAAATTACGCGCAGTTC
GGTGATGGATTTAAAAACTGGAATCGCTAA

Upstream 100 bases:

>100_bases
CGATCAGGCATGGGGTGAACGAGCGTTGATGAGGCAACGCTTCTTCCTCCATGCCTTTTCGTTTGGGGGTCAGCCAAATT
TGACTAAGGGGAGTGGGAAC

Downstream 100 bases:

>100_bases
ACGAAAATGAGCTCGCCCGAAAATCGGGAGAGCTCATTTTTTCATGCCTCGAAATAGGCGATGACGAGTAGACCGGGACC
GGTGTGGGCACCGATGGCAG

Product: beta-N-acetylhexosaminidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 649; Mature: 649

Protein sequence:

>649_residues
MNKALNWTATLGLTTALLVSSVPAADAVVAEGTPTMSIDQRVNTKLESMTLEQKIGQMIMPDFRLWNGANHTSLAPEVAR
VIDRFDLGGVILFAENVKETEQTTKLVHDLQEVVKQDASNDIPLFVTIDQEGGIVTRLGTGTNLPGNMALGATRNRQYAY
DAGEIIGSELHALGVNVNFGPVLDVNNNPGNPVIGVRSFSSDPELVGELGSAMTQGIQDQGVAATAKHFPGHGDTAVDSH
YGLPIVDKSLDELRGLELLPFKRAITEGIDMIMTAHIGMPQIEDEVVESERGTFPLPATLSDDVITGVLREELGYEGIVV
TDALNMQAIADNFTEAEAVIKTFEAGVDIALMPTILRSEADVIKLEAIFEEVIAAVKDGRLSEATIDESVERILKLKAER
GIWGETMDSTTLETKLAGANAVVGSAEHKAKEREIAEAAVTLVKNEKKTLPFKPKKGDTVLVLSPAKDQTDSMVKTIKSL
EKNAGNMKDVNVITANYSASTPHLEQNPALRQQVEAADYIIVGSNVNNSAKLKPTSADHYVPAEVFRYANETGKQSVLLS
LRNPYDIAVQPDAPAHLLIYGFKGDPNGPDSEAGNLKSAGPNLPAGIRAIFGEVKPQGKLPVDVPKFVDGVFQDENYAQF
GDGFKNWNR

Sequences:

>Translated_649_residues
MNKALNWTATLGLTTALLVSSVPAADAVVAEGTPTMSIDQRVNTKLESMTLEQKIGQMIMPDFRLWNGANHTSLAPEVAR
VIDRFDLGGVILFAENVKETEQTTKLVHDLQEVVKQDASNDIPLFVTIDQEGGIVTRLGTGTNLPGNMALGATRNRQYAY
DAGEIIGSELHALGVNVNFGPVLDVNNNPGNPVIGVRSFSSDPELVGELGSAMTQGIQDQGVAATAKHFPGHGDTAVDSH
YGLPIVDKSLDELRGLELLPFKRAITEGIDMIMTAHIGMPQIEDEVVESERGTFPLPATLSDDVITGVLREELGYEGIVV
TDALNMQAIADNFTEAEAVIKTFEAGVDIALMPTILRSEADVIKLEAIFEEVIAAVKDGRLSEATIDESVERILKLKAER
GIWGETMDSTTLETKLAGANAVVGSAEHKAKEREIAEAAVTLVKNEKKTLPFKPKKGDTVLVLSPAKDQTDSMVKTIKSL
EKNAGNMKDVNVITANYSASTPHLEQNPALRQQVEAADYIIVGSNVNNSAKLKPTSADHYVPAEVFRYANETGKQSVLLS
LRNPYDIAVQPDAPAHLLIYGFKGDPNGPDSEAGNLKSAGPNLPAGIRAIFGEVKPQGKLPVDVPKFVDGVFQDENYAQF
GDGFKNWNR
>Mature_649_residues
MNKALNWTATLGLTTALLVSSVPAADAVVAEGTPTMSIDQRVNTKLESMTLEQKIGQMIMPDFRLWNGANHTSLAPEVAR
VIDRFDLGGVILFAENVKETEQTTKLVHDLQEVVKQDASNDIPLFVTIDQEGGIVTRLGTGTNLPGNMALGATRNRQYAY
DAGEIIGSELHALGVNVNFGPVLDVNNNPGNPVIGVRSFSSDPELVGELGSAMTQGIQDQGVAATAKHFPGHGDTAVDSH
YGLPIVDKSLDELRGLELLPFKRAITEGIDMIMTAHIGMPQIEDEVVESERGTFPLPATLSDDVITGVLREELGYEGIVV
TDALNMQAIADNFTEAEAVIKTFEAGVDIALMPTILRSEADVIKLEAIFEEVIAAVKDGRLSEATIDESVERILKLKAER
GIWGETMDSTTLETKLAGANAVVGSAEHKAKEREIAEAAVTLVKNEKKTLPFKPKKGDTVLVLSPAKDQTDSMVKTIKSL
EKNAGNMKDVNVITANYSASTPHLEQNPALRQQVEAADYIIVGSNVNNSAKLKPTSADHYVPAEVFRYANETGKQSVLLS
LRNPYDIAVQPDAPAHLLIYGFKGDPNGPDSEAGNLKSAGPNLPAGIRAIFGEVKPQGKLPVDVPKFVDGVFQDENYAQF
GDGFKNWNR

Specific function: Hydrolyses the beta-1,4-glycosidic bond between N-acetylglucosamine and anhydro-N-acetylmuramic acid in cell wall degradation products following their importation into the cell during the process for recycling cell wall muropeptides [C]

COG id: COG1472

COG function: function code G; Beta-glucosidase-related glycosidases

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1787350, Length=272, Percent_Identity=32.3529411764706, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI1788453, Length=478, Percent_Identity=24.2677824267782, Blast_Score=97, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019800
- InterPro:   IPR002772
- InterPro:   IPR001764
- InterPro:   IPR017853 [H]

Pfam domain/function: PF00933 Glyco_hydro_3; PF01915 Glyco_hydro_3_C [H]

EC number: 3.2.1.52

Molecular weight: Translated: 69838; Mature: 69838

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: PS00775 GLYCOSYL_HYDROL_F3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKALNWTATLGLTTALLVSSVPAADAVVAEGTPTMSIDQRVNTKLESMTLEQKIGQMIM
CCCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
PDFRLWNGANHTSLAPEVARVIDRFDLGGVILFAENVKETEQTTKLVHDLQEVVKQDASN
CCHHEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
DIPLFVTIDQEGGIVTRLGTGTNLPGNMALGATRNRQYAYDAGEIIGSELHALGVNVNFG
CCCEEEEEECCCCEEEEECCCCCCCCCEEECCCCCCCEECCHHHHHHCCHHEEEECCCCC
PVLDVNNNPGNPVIGVRSFSSDPELVGELGSAMTQGIQDQGVAATAKHFPGHGDTAVDSH
CEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCCCCCCCC
YGLPIVDKSLDELRGLELLPFKRAITEGIDMIMTAHIGMPQIEDEVVESERGTFPLPATL
CCCCCHHCCHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC
SDDVITGVLREELGYEGIVVTDALNMQAIADNFTEAEAVIKTFEAGVDIALMPTILRSEA
CHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHCCC
DVIKLEAIFEEVIAAVKDGRLSEATIDESVERILKLKAERGIWGETMDSTTLETKLAGAN
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCC
AVVGSAEHKAKEREIAEAAVTLVKNEKKTLPFKPKKGDTVLVLSPAKDQTDSMVKTIKSL
CEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EKNAGNMKDVNVITANYSASTPHLEQNPALRQQVEAADYIIVGSNVNNSAKLKPTSADHY
HHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCEECCCCCCCC
VPAEVFRYANETGKQSVLLSLRNPYDIAVQPDAPAHLLIYGFKGDPNGPDSEAGNLKSAG
CHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
PNLPAGIRAIFGEVKPQGKLPVDVPKFVDGVFQDENYAQFGDGFKNWNR
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MNKALNWTATLGLTTALLVSSVPAADAVVAEGTPTMSIDQRVNTKLESMTLEQKIGQMIM
CCCCCCEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
PDFRLWNGANHTSLAPEVARVIDRFDLGGVILFAENVKETEQTTKLVHDLQEVVKQDASN
CCHHEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
DIPLFVTIDQEGGIVTRLGTGTNLPGNMALGATRNRQYAYDAGEIIGSELHALGVNVNFG
CCCEEEEEECCCCEEEEECCCCCCCCCEEECCCCCCCEECCHHHHHHCCHHEEEECCCCC
PVLDVNNNPGNPVIGVRSFSSDPELVGELGSAMTQGIQDQGVAATAKHFPGHGDTAVDSH
CEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEHHHHCCCCCCCCCCCC
YGLPIVDKSLDELRGLELLPFKRAITEGIDMIMTAHIGMPQIEDEVVESERGTFPLPATL
CCCCCHHCCHHHHCCCEECHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCC
SDDVITGVLREELGYEGIVVTDALNMQAIADNFTEAEAVIKTFEAGVDIALMPTILRSEA
CHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCHHHHHHHHHHHHCCCCEEEHHHHHHCCC
DVIKLEAIFEEVIAAVKDGRLSEATIDESVERILKLKAERGIWGETMDSTTLETKLAGAN
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCC
AVVGSAEHKAKEREIAEAAVTLVKNEKKTLPFKPKKGDTVLVLSPAKDQTDSMVKTIKSL
CEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHH
EKNAGNMKDVNVITANYSASTPHLEQNPALRQQVEAADYIIVGSNVNNSAKLKPTSADHY
HHCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCEECCCCCCCC
VPAEVFRYANETGKQSVLLSLRNPYDIAVQPDAPAHLLIYGFKGDPNGPDSEAGNLKSAG
CHHHHHHHHCCCCCCEEEEEECCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCCCCCC
PNLPAGIRAIFGEVKPQGKLPVDVPKFVDGVFQDENYAQFGDGFKNWNR
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8011666; 9274029; 9384377 [H]