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The map label for this gene is ugpB [H]

Identifier: 229917003

GI number: 229917003

Start: 1253871

End: 1255178

Strand: Reverse

Name: ugpB [H]

Synonym: EAT1b_1277

Alternate gene names: 229917003

Gene position: 1255178-1253871 (Counterclockwise)

Preceding gene: 229917004

Following gene: 229917002

Centisome position: 41.84

GC content: 51.61

Gene sequence:

>1308_bases
ATGAAAAAATTAGGATTATTCGCAGGGTTGGCAAGTTCGGTGTTATTACTCGGGGCATGTGGCAGTGAAGAAGCGGCACC
CGTCGCGGCGACGACAGAAGACGGAAAGACAGAGGTCGTCTTTTGGCATGCGATGAGCGGGGACCTGGAGACGGCTTTAA
ACAGTCAAGTCGATGCGTTCAACGCTTCGCAAGACGACTATGAAGTCAAACCGGTCTTCCAAGGAACGTATGAAGAAGCA
CTGACAAAATTCAATGCGGTCGCCGGTTCGGAAGACGCGCCCGCCATCATGCAGACGTTCGAAGTCGGGACGAAATACAT
GATCGACTCGAACAAAATCACACCCGTTCAGGAGTTCATCGACAAAGAGAAGTTTGACACGAGCGTATGGGAAGAGAACA
TCTTGAGTTATTACCAAGTCGATGGGAAACAATACTCGATGCCGTTCAACTCATCGACACCGGTCCTCATCTATAACAAG
GAAGCGTTTGAGAAAGCAGGGCTCGACCCGGAGAAGGCACCGCGTACGTATGACGAATTGAAAGCAGCAGCGAAGAAGCT
GACGACGGACGACCAAACCGGCTTCACGATGCTCAACTATGGTTGGTTCTTTGAACAGCTCGTGGCTGCGCAAGGTGGAT
TGTATGTCGACAATGACAATGGACGAAGTGGAGACCCGACGAAAGCCGTGTTCGATGGCGAAGAAGGACAGAACGCGTTC
AATCTCATCAAAGAAATGTACGACGAGAAGACGTTCTTAAACGTCGGTCAAAATTGGGACGATATGCGTGCGGCATTCCA
ATCTGGGAAAGTTGCCATGTATCTGGACTCGTCAGCAGGAATCCGTACGGTCGCAGACAATGCGGACTTTGAAATCGGCG
CATCGTACTTACCGGTACCGAATGAAGCGGAGCGTCAAGGCGTCGTCATCGGCGGGGCATCGCTCTGGATGGGTGACGGC
ATTGCCGAAGAGACGAAAGAAGGCGCATGGGAGTTCATGAAATATGTCGCTTCGACGGAAGCGCAAGCACAGTGGCATGT
CGACACAGGCTACTTCGCCATCAATCCAGAAGCGTACAACGAGCCGATCGTAAAAGAAATGTGGGCGAAATATCCACAAC
TGAAAGTGACGGTCGACCAACTCAGTGAGACGAAACCATCACCGGCGACACAAGGAGCGCTCATCTCGACGTTCCCACAA
TCACGACAAAGTGTCGTCAATGCGATGGAAAGTTTGTATCAAGGGGTGTCGGTCGAAGAGGCATTGAAACGTGCGGCTGA
TGAGACGACTTCCACCTTGGGGCAATGA

Upstream 100 bases:

>100_bases
TTGATCATCATTCCGACACTTGTATTGTTGTTCGCAGGACAAAAGCACTTGCAAGAAGGTTTGACGCAAGGCGCTATCAA
ATAATAGGGGGATATGACAA

Downstream 100 bases:

>100_bases
CATGTTGATTTACGCACATCGCGGCTATAGCGCCAATTACCCGGAAAATACATTGTCCGCGTTCGAGGCAGCTCTTCCCT
ATGTGGATGGGATCGAGCTG

Product: extracellular solute-binding protein family 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKKLGLFAGLASSVLLLGACGSEEAAPVAATTEDGKTEVVFWHAMSGDLETALNSQVDAFNASQDDYEVKPVFQGTYEEA
LTKFNAVAGSEDAPAIMQTFEVGTKYMIDSNKITPVQEFIDKEKFDTSVWEENILSYYQVDGKQYSMPFNSSTPVLIYNK
EAFEKAGLDPEKAPRTYDELKAAAKKLTTDDQTGFTMLNYGWFFEQLVAAQGGLYVDNDNGRSGDPTKAVFDGEEGQNAF
NLIKEMYDEKTFLNVGQNWDDMRAAFQSGKVAMYLDSSAGIRTVADNADFEIGASYLPVPNEAERQGVVIGGASLWMGDG
IAEETKEGAWEFMKYVASTEAQAQWHVDTGYFAINPEAYNEPIVKEMWAKYPQLKVTVDQLSETKPSPATQGALISTFPQ
SRQSVVNAMESLYQGVSVEEALKRAADETTSTLGQ

Sequences:

>Translated_435_residues
MKKLGLFAGLASSVLLLGACGSEEAAPVAATTEDGKTEVVFWHAMSGDLETALNSQVDAFNASQDDYEVKPVFQGTYEEA
LTKFNAVAGSEDAPAIMQTFEVGTKYMIDSNKITPVQEFIDKEKFDTSVWEENILSYYQVDGKQYSMPFNSSTPVLIYNK
EAFEKAGLDPEKAPRTYDELKAAAKKLTTDDQTGFTMLNYGWFFEQLVAAQGGLYVDNDNGRSGDPTKAVFDGEEGQNAF
NLIKEMYDEKTFLNVGQNWDDMRAAFQSGKVAMYLDSSAGIRTVADNADFEIGASYLPVPNEAERQGVVIGGASLWMGDG
IAEETKEGAWEFMKYVASTEAQAQWHVDTGYFAINPEAYNEPIVKEMWAKYPQLKVTVDQLSETKPSPATQGALISTFPQ
SRQSVVNAMESLYQGVSVEEALKRAADETTSTLGQ
>Mature_435_residues
MKKLGLFAGLASSVLLLGACGSEEAAPVAATTEDGKTEVVFWHAMSGDLETALNSQVDAFNASQDDYEVKPVFQGTYEEA
LTKFNAVAGSEDAPAIMQTFEVGTKYMIDSNKITPVQEFIDKEKFDTSVWEENILSYYQVDGKQYSMPFNSSTPVLIYNK
EAFEKAGLDPEKAPRTYDELKAAAKKLTTDDQTGFTMLNYGWFFEQLVAAQGGLYVDNDNGRSGDPTKAVFDGEEGQNAF
NLIKEMYDEKTFLNVGQNWDDMRAAFQSGKVAMYLDSSAGIRTVADNADFEIGASYLPVPNEAERQGVVIGGASLWMGDG
IAEETKEGAWEFMKYVASTEAQAQWHVDTGYFAINPEAYNEPIVKEMWAKYPQLKVTVDQLSETKPSPATQGALISTFPQ
SRQSVVNAMESLYQGVSVEEALKRAADETTSTLGQ

Specific function: sn-glycerol-3-phosphate and glycerophosphoryl diester- binding protein interacts with the binding protein-dependent transport system ugpACE [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=406, Percent_Identity=33.743842364532, Blast_Score=209, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47758; Mature: 47758

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLGLFAGLASSVLLLGACGSEEAAPVAATTEDGKTEVVFWHAMSGDLETALNSQVDAF
CCCHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHCHHHCC
NASQDDYEVKPVFQGTYEEALTKFNAVAGSEDAPAIMQTFEVGTKYMIDSNKITPVQEFI
CCCCCCCEECHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHH
DKEKFDTSVWEENILSYYQVDGKQYSMPFNSSTPVLIYNKEAFEKAGLDPEKAPRTYDEL
HHHHCCHHHHHHHHHHHEEECCEEEECCCCCCCCEEEECHHHHHHCCCCHHHCCCCHHHH
KAAAKKLTTDDQTGFTMLNYGWFFEQLVAAQGGLYVDNDNGRSGDPTKAVFDGEEGQNAF
HHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCCHHH
NLIKEMYDEKTFLNVGQNWDDMRAAFQSGKVAMYLDSSAGIRTVADNADFEIGASYLPVP
HHHHHHHCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCEECCCCCCCC
NEAERQGVVIGGASLWMGDGIAEETKEGAWEFMKYVASTEAQAQWHVDTGYFAINPEAYN
CCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHCC
EPIVKEMWAKYPQLKVTVDQLSETKPSPATQGALISTFPQSRQSVVNAMESLYQGVSVEE
CHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCHHH
ALKRAADETTSTLGQ
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKLGLFAGLASSVLLLGACGSEEAAPVAATTEDGKTEVVFWHAMSGDLETALNSQVDAF
CCCHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHCHHHCC
NASQDDYEVKPVFQGTYEEALTKFNAVAGSEDAPAIMQTFEVGTKYMIDSNKITPVQEFI
CCCCCCCEECHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHH
DKEKFDTSVWEENILSYYQVDGKQYSMPFNSSTPVLIYNKEAFEKAGLDPEKAPRTYDEL
HHHHCCHHHHHHHHHHHEEECCEEEECCCCCCCCEEEECHHHHHHCCCCHHHCCCCHHHH
KAAAKKLTTDDQTGFTMLNYGWFFEQLVAAQGGLYVDNDNGRSGDPTKAVFDGEEGQNAF
HHHHHHCCCCCCCCEEEEEHHHHHHHHHHHCCCEEEECCCCCCCCCCCEEECCCCCCHHH
NLIKEMYDEKTFLNVGQNWDDMRAAFQSGKVAMYLDSSAGIRTVADNADFEIGASYLPVP
HHHHHHHCCHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCCEEECCCCCCEECCCCCCCC
NEAERQGVVIGGASLWMGDGIAEETKEGAWEFMKYVASTEAQAQWHVDTGYFAINPEAYN
CCCCCCCEEEECCHHHCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHCC
EPIVKEMWAKYPQLKVTVDQLSETKPSPATQGALISTFPQSRQSVVNAMESLYQGVSVEE
CHHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCHHH
ALKRAADETTSTLGQ
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA