| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is 229916921
Identifier: 229916921
GI number: 229916921
Start: 1165277
End: 1166839
Strand: Reverse
Name: 229916921
Synonym: EAT1b_1194
Alternate gene names: NA
Gene position: 1166839-1165277 (Counterclockwise)
Preceding gene: 229916922
Following gene: 229916920
Centisome position: 38.9
GC content: 52.85
Gene sequence:
>1563_bases ATGTCGACACGCATGACGCTAGACGAGGCAGCCAGTAACCGTAAAATCAAGATCGGGGCGGTCATGTCCTACACGCAGAT CTTTTTCGGCATCTTATCCGGTCTCATCTATACGCCGTGGATGATTCATGAGATCGGGCAGGCGAGTTACGGGTTGTATA TGCTGACCATCTCGCTCATCAGTATGTTCGCGATGGACTTCGGGCTCGATGCGGCCGTCTCACGATTCATGAGCAAGTAT ATGGCGGAGGGGGACCACGAGCGGGCAGGACGATTTTTAGGCATCGCCTATAAACTGTTCATCGCCATCTCACTCGTCCT CTTCCTCATCCTCACCGTCGTCTACTTCTTCTTGGACTCGATTTACTCGAGTTTGACGGCGACCGAGCTCGAACAGTTGA AAGTCCTCTATGTGATTGCGGGACTGTTCATCGTCGTCTCGTTCCCGACGAAGCCATTCTCTGGCATTCTCGTATCCCAT GAACAATTCCTCTTCTCGAGTGCCCTGCATCTCGCTGAGAAGGTCGGGACGGTCGCCTTGATGGTCACTGCGCTTCTTCT CGGCTATGGGTTGTATGCCCTCGTCATCGTCAATGCGCTAGTCGGCACGATTGTCTTACTCATCGAGTACGTCTTCATTC GGCGTAAGACTCTCGTTCGTGCCAATTTTCAGAATCGAGAGAAGGGGATTTATCGGGACATCTTTAGCTTCACGTCCTGG AGCACGATTACGCTCGTCGCCCAACGCTTCGTGTTGAACATTACCCCGAGTCTACTGGGGATTCTAGCGGGCAGTGCCTC GATTGCCCTCTTTTCCGTCGGGATGGTCATCGAAGGGTATGTCTGGACCATCGCGGCCTCGCTCGGTTACTTATTCCTTC CGAAAGTCAGTCGGATGTTGTCCCGAAACGATCGCGAGGCCATCGGGTACCTCTTCGTCCGCATCGGTCGGATTCAACTG TATATCGTCGGACTCATCCTCGCCTCGTTCTTCATCCTCGGTCGCGAGTTCATGCACCTATGGGTCGGACCAGACTTCAC CGACTCCTACGTCATCGCCCTTCTCTTGATTGCACCGAGTGTGATCACATTGACGCAAGACATCGGCAATACGACACTCA TTGCCGAGAACAAAGTGAAGTATCGGGCGTTCGCTGCCCTCATCGTGGCCGCCATCAGTATGACGCTCTCACCACTGTTG ATTCCACACTTTGGTCCGATTGGTGCGGCCATCGCCATTTGTATCGGCAACATCGTCGGACTCGTCTTCTATATGAACGT GATTTACCATCGGGTCCTCGGTCTCGACATCCTCGACTTTTTCCGCAAGTGCCATCTGAAGCTCTTGCCTGGTATTCTCC TGTACACGCTCATCGGCTGGGGAATCCAGTTCTTCTTCCCGTCCTCGAATTGGTTCGGCTTCGGGGTGAAGGGAATCGTG CTCATCAGTATTTACGCAATAATCATGTGGGGACTCGCATTTGATGAGACGGAGAAAGCCATGTTCCGCCAAGTGTTCGC TCAATTGAAACTACGCATCCTATCCATTCACCACACATCCTAG
Upstream 100 bases:
>100_bases ACTCGTCGTCTATTACTCGGCGGTCATGTTGCTCGGTCTCTTGTTCATTCGCGAAGCGCCGGTTTATTCGTTCTTTTGGT AACACGAGGAGGTGAAGCAT
Downstream 100 bases:
>100_bases GAGGGAACAAGATGAAACGACTCAAGGTCATGACGATTGTTGGTACCAGACCCGAAATCATTCGATTGTCCGCCGTGATG GCACGTCTCGAAGCCTCCGA
Product: polysaccharide biosynthesis protein
Products: NA
Alternate protein names: Polysaccharide Biosynthesis Family Protein; Virulence Factor MviN Family Protein
Number of amino acids: Translated: 520; Mature: 519
Protein sequence:
>520_residues MSTRMTLDEAASNRKIKIGAVMSYTQIFFGILSGLIYTPWMIHEIGQASYGLYMLTISLISMFAMDFGLDAAVSRFMSKY MAEGDHERAGRFLGIAYKLFIAISLVLFLILTVVYFFLDSIYSSLTATELEQLKVLYVIAGLFIVVSFPTKPFSGILVSH EQFLFSSALHLAEKVGTVALMVTALLLGYGLYALVIVNALVGTIVLLIEYVFIRRKTLVRANFQNREKGIYRDIFSFTSW STITLVAQRFVLNITPSLLGILAGSASIALFSVGMVIEGYVWTIAASLGYLFLPKVSRMLSRNDREAIGYLFVRIGRIQL YIVGLILASFFILGREFMHLWVGPDFTDSYVIALLLIAPSVITLTQDIGNTTLIAENKVKYRAFAALIVAAISMTLSPLL IPHFGPIGAAIAICIGNIVGLVFYMNVIYHRVLGLDILDFFRKCHLKLLPGILLYTLIGWGIQFFFPSSNWFGFGVKGIV LISIYAIIMWGLAFDETEKAMFRQVFAQLKLRILSIHHTS
Sequences:
>Translated_520_residues MSTRMTLDEAASNRKIKIGAVMSYTQIFFGILSGLIYTPWMIHEIGQASYGLYMLTISLISMFAMDFGLDAAVSRFMSKY MAEGDHERAGRFLGIAYKLFIAISLVLFLILTVVYFFLDSIYSSLTATELEQLKVLYVIAGLFIVVSFPTKPFSGILVSH EQFLFSSALHLAEKVGTVALMVTALLLGYGLYALVIVNALVGTIVLLIEYVFIRRKTLVRANFQNREKGIYRDIFSFTSW STITLVAQRFVLNITPSLLGILAGSASIALFSVGMVIEGYVWTIAASLGYLFLPKVSRMLSRNDREAIGYLFVRIGRIQL YIVGLILASFFILGREFMHLWVGPDFTDSYVIALLLIAPSVITLTQDIGNTTLIAENKVKYRAFAALIVAAISMTLSPLL IPHFGPIGAAIAICIGNIVGLVFYMNVIYHRVLGLDILDFFRKCHLKLLPGILLYTLIGWGIQFFFPSSNWFGFGVKGIV LISIYAIIMWGLAFDETEKAMFRQVFAQLKLRILSIHHTS >Mature_519_residues STRMTLDEAASNRKIKIGAVMSYTQIFFGILSGLIYTPWMIHEIGQASYGLYMLTISLISMFAMDFGLDAAVSRFMSKYM AEGDHERAGRFLGIAYKLFIAISLVLFLILTVVYFFLDSIYSSLTATELEQLKVLYVIAGLFIVVSFPTKPFSGILVSHE QFLFSSALHLAEKVGTVALMVTALLLGYGLYALVIVNALVGTIVLLIEYVFIRRKTLVRANFQNREKGIYRDIFSFTSWS TITLVAQRFVLNITPSLLGILAGSASIALFSVGMVIEGYVWTIAASLGYLFLPKVSRMLSRNDREAIGYLFVRIGRIQLY IVGLILASFFILGREFMHLWVGPDFTDSYVIALLLIAPSVITLTQDIGNTTLIAENKVKYRAFAALIVAAISMTLSPLLI PHFGPIGAAIAICIGNIVGLVFYMNVIYHRVLGLDILDFFRKCHLKLLPGILLYTLIGWGIQFFFPSSNWFGFGVKGIVL ISIYAIIMWGLAFDETEKAMFRQVFAQLKLRILSIHHTS
Specific function: Unknown
COG id: COG2244
COG function: function code R; Membrane protein involved in the export of O-antigen and teichoic acid
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58014; Mature: 57883
Theoretical pI: Translated: 9.65; Mature: 9.65
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTRMTLDEAASNRKIKIGAVMSYTQIFFGILSGLIYTPWMIHEIGQASYGLYMLTISLI CCCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHH SMFAMDFGLDAAVSRFMSKYMAEGDHERAGRFLGIAYKLFIAISLVLFLILTVVYFFLDS HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYSSLTATELEQLKVLYVIAGLFIVVSFPTKPFSGILVSHEQFLFSSALHLAEKVGTVAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVTALLLGYGLYALVIVNALVGTIVLLIEYVFIRRKTLVRANFQNREKGIYRDIFSFTSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC STITLVAQRFVLNITPSLLGILAGSASIALFSVGMVIEGYVWTIAASLGYLFLPKVSRML HHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRNDREAIGYLFVRIGRIQLYIVGLILASFFILGREFMHLWVGPDFTDSYVIALLLIAPS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCH VITLTQDIGNTTLIAENKVKYRAFAALIVAAISMTLSPLLIPHFGPIGAAIAICIGNIVG HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LVFYMNVIYHRVLGLDILDFFRKCHLKLLPGILLYTLIGWGIQFFFPSSNWFGFGVKGIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH LISIYAIIMWGLAFDETEKAMFRQVFAQLKLRILSIHHTS HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCC >Mature Secondary Structure STRMTLDEAASNRKIKIGAVMSYTQIFFGILSGLIYTPWMIHEIGQASYGLYMLTISLI CCCCCHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHHHHHHHH SMFAMDFGLDAAVSRFMSKYMAEGDHERAGRFLGIAYKLFIAISLVLFLILTVVYFFLDS HHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IYSSLTATELEQLKVLYVIAGLFIVVSFPTKPFSGILVSHEQFLFSSALHLAEKVGTVAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH MVTALLLGYGLYALVIVNALVGTIVLLIEYVFIRRKTLVRANFQNREKGIYRDIFSFTSW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCC STITLVAQRFVLNITPSLLGILAGSASIALFSVGMVIEGYVWTIAASLGYLFLPKVSRML HHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SRNDREAIGYLFVRIGRIQLYIVGLILASFFILGREFMHLWVGPDFTDSYVIALLLIAPS CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCH VITLTQDIGNTTLIAENKVKYRAFAALIVAAISMTLSPLLIPHFGPIGAAIAICIGNIVG HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LVFYMNVIYHRVLGLDILDFFRKCHLKLLPGILLYTLIGWGIQFFFPSSNWFGFGVKGIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHH LISIYAIIMWGLAFDETEKAMFRQVFAQLKLRILSIHHTS HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA