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The map label for this gene is ybbO [C]

Identifier: 229916883

GI number: 229916883

Start: 1123803

End: 1124561

Strand: Reverse

Name: ybbO [C]

Synonym: EAT1b_1156

Alternate gene names: 229916883

Gene position: 1124561-1123803 (Counterclockwise)

Preceding gene: 229916884

Following gene: 229916881

Centisome position: 37.49

GC content: 50.2

Gene sequence:

>759_bases
GTGGATTATATGAAGTATACGGTCATTACAGGAGCCAGTTCAGGTATCGGGTATGAGACAGCGAAACTTTTAGCTGAAAA
AGGAAAGTCGCTCGTGCTCGTCGCAAGACGAAAAGAAGAGTTGGAGTCGTTACGCGATGAAATCAAATCCATCTCGTCGG
ACAGTGACGTCATCATCAAATCGACCGACCTATCATATAGCGAGAACGTGTACGGATTATATGAATCGCTTGCGGACCTC
GACATCGAGACGTGGATCAACAACGCAGGATTCGGGGATGCAGATCTCATCAAGGACGTCGACCTCGGTAAAATCGAGAA
CATGATTCGTTTGAATATCGAGGCACTCACCGTCTTATCGAGTCTATACGTTCGAGATTATCATGACGTCGAAGGGGCAC
AACTGTTGAACGTGTCATCTGTCGGAGGATATCGAATCGTCCCGAACTCGGTCACATATTGTGCGACGAAGTTCTTCGTC
AGTGCGTATACGGAAGGGCTCGCGCAAGAGTTGAAGCAGAATGGTGCCAAGCTTCGGGCGAAAGTACTGGCACCGGCCGC
GACGGAGACGAGTTTCGCGGACCGGGCGCGCGATACGGAAGGATTCGACTACAGTGAAAACGTCGCGAAGTATCATACGG
CGCGCGAGATGGCAGAATTTCTGTATGAATTGCTCGAAGGGGACGAAGTCGTCGGCATTGTCGACCCGGAAGATTATTCG
TTCAGCCTACGTGGACCGATTAAACCGTATGCTGGATAA

Upstream 100 bases:

>100_bases
GAAAGTCCTGCCTCTTCGGAGTCAGGGCTTTTCGTTCACATCGGAACGATTCGCGATGAAGAAAGTGGGGAATGAACAAC
AAGGTAAACGACAAAAAGGA

Downstream 100 bases:

>100_bases
ACAAAAACATCACGCCGTGTTGGCGTGATGTTTTTTTAGGATGTCGGTACAGAGTAGCCACCCGTGAAGCGGTGTGTCAG
GCGACGTGTCAAGTAACGTA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 252

Protein sequence:

>252_residues
MDYMKYTVITGASSGIGYETAKLLAEKGKSLVLVARRKEELESLRDEIKSISSDSDVIIKSTDLSYSENVYGLYESLADL
DIETWINNAGFGDADLIKDVDLGKIENMIRLNIEALTVLSSLYVRDYHDVEGAQLLNVSSVGGYRIVPNSVTYCATKFFV
SAYTEGLAQELKQNGAKLRAKVLAPAATETSFADRARDTEGFDYSENVAKYHTAREMAEFLYELLEGDEVVGIVDPEDYS
FSLRGPIKPYAG

Sequences:

>Translated_252_residues
MDYMKYTVITGASSGIGYETAKLLAEKGKSLVLVARRKEELESLRDEIKSISSDSDVIIKSTDLSYSENVYGLYESLADL
DIETWINNAGFGDADLIKDVDLGKIENMIRLNIEALTVLSSLYVRDYHDVEGAQLLNVSSVGGYRIVPNSVTYCATKFFV
SAYTEGLAQELKQNGAKLRAKVLAPAATETSFADRARDTEGFDYSENVAKYHTAREMAEFLYELLEGDEVVGIVDPEDYS
FSLRGPIKPYAG
>Mature_252_residues
MDYMKYTVITGASSGIGYETAKLLAEKGKSLVLVARRKEELESLRDEIKSISSDSDVIIKSTDLSYSENVYGLYESLADL
DIETWINNAGFGDADLIKDVDLGKIENMIRLNIEALTVLSSLYVRDYHDVEGAQLLNVSSVGGYRIVPNSVTYCATKFFV
SAYTEGLAQELKQNGAKLRAKVLAPAATETSFADRARDTEGFDYSENVAKYHTAREMAEFLYELLEGDEVVGIVDPEDYS
FSLRGPIKPYAG

Specific function: Unknown

COG id: COG0300

COG function: function code R; Short-chain dehydrogenases of various substrate specificities

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=200, Percent_Identity=31.5, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI4557649, Length=192, Percent_Identity=30.2083333333333, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7705855, Length=227, Percent_Identity=29.5154185022026, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI7706318, Length=169, Percent_Identity=30.7692307692308, Blast_Score=71, Evalue=1e-12,
Organism=Escherichia coli, GI1786701, Length=214, Percent_Identity=24.7663551401869, Blast_Score=63, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=28.7937743190661, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=30.5, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=234, Percent_Identity=29.0598290598291, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=182, Percent_Identity=30.2197802197802, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=222, Percent_Identity=27.027027027027, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560176, Length=214, Percent_Identity=28.0373831775701, Blast_Score=64, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=195, Percent_Identity=31.7948717948718, Blast_Score=89, Evalue=8e-19,
Organism=Saccharomyces cerevisiae, GI6319635, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24580925, Length=198, Percent_Identity=31.8181818181818, Blast_Score=81, Evalue=6e-16,
Organism=Drosophila melanogaster, GI161076933, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24584748, Length=200, Percent_Identity=29, Blast_Score=77, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24584752, Length=196, Percent_Identity=28.0612244897959, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI23397609, Length=186, Percent_Identity=26.8817204301075, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28571526, Length=177, Percent_Identity=29.9435028248588, Blast_Score=72, Evalue=3e-13,
Organism=Drosophila melanogaster, GI21357041, Length=178, Percent_Identity=29.2134831460674, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24644339, Length=193, Percent_Identity=29.0155440414508, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640442, Length=200, Percent_Identity=27.5, Blast_Score=71, Evalue=8e-13,
Organism=Drosophila melanogaster, GI28574402, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24584744, Length=201, Percent_Identity=27.8606965174129, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648944, Length=202, Percent_Identity=27.7227722772277, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI281364494, Length=199, Percent_Identity=25.6281407035176, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007236, Length=198, Percent_Identity=26.7676767676768, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 27857; Mature: 27857

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYMKYTVITGASSGIGYETAKLLAEKGKSLVLVARRKEELESLRDEIKSISSDSDVIIK
CCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEE
STDLSYSENVYGLYESLADLDIETWINNAGFGDADLIKDVDLGKIENMIRLNIEALTVLS
ECCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
SLYVRDYHDVEGAQLLNVSSVGGYRIVPNSVTYCATKFFVSAYTEGLAQELKQNGAKLRA
HHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEH
KVLAPAATETSFADRARDTEGFDYSENVAKYHTAREMAEFLYELLEGDEVVGIVDPEDYS
HHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE
FSLRGPIKPYAG
EEECCCCCCCCC
>Mature Secondary Structure
MDYMKYTVITGASSGIGYETAKLLAEKGKSLVLVARRKEELESLRDEIKSISSDSDVIIK
CCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEE
STDLSYSENVYGLYESLADLDIETWINNAGFGDADLIKDVDLGKIENMIRLNIEALTVLS
ECCCCCCCHHHHHHHHHHHCCHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
SLYVRDYHDVEGAQLLNVSSVGGYRIVPNSVTYCATKFFVSAYTEGLAQELKQNGAKLRA
HHHHHCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHEEH
KVLAPAATETSFADRARDTEGFDYSENVAKYHTAREMAEFLYELLEGDEVVGIVDPEDYS
HHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCE
FSLRGPIKPYAG
EEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA