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The map label for this gene is xerD [C]

Identifier: 229916806

GI number: 229916806

Start: 1041117

End: 1041980

Strand: Direct

Name: xerD [C]

Synonym: EAT1b_1079

Alternate gene names: 229916806

Gene position: 1041117-1041980 (Clockwise)

Preceding gene: 229916805

Following gene: 229916808

Centisome position: 34.71

GC content: 56.02

Gene sequence:

>864_bases
ATGACTTTACACATGAAGGACGCTGTCGACCAGCACGTTCACTACTTACGCATGACCGGAAAATCGGACAACACGGTCAG
TCAGGCGACCTATAAGTTCGCCCGCTTCCAAAAACTCATGGGACAGAACCGAACCCTCGACGACTTCAAGACGAGACAGG
ACGTCATGCCGTATATCACTGCCCTCCGCTCGGAAGGATGCCAACCGGTGACCATCAACAATTACTTGAGTGCACTCCGT
GGTTTGTATGACTGGGCCATCACCGAGCAACTCGTCACGCACAATCCGTTTCATCATCTTCGCGTGAAAGTGACCGAACG
TCCACCTTCGGACGTCCCTACGCCAAGCGACCTACACCGAGTCATCGATGCGATCGACGTCCCATTGTATCGAACCTTCT
TGACGCTCCAGTTGCATACGGGGATGCGCATCAACGAGGTGAGACAGCTGACACTTGATGCCATCGATTTGAACGCGCGT
CTCCTGTACATCCACGAATCGAAGACGGGGAAACCACGCAAGGTCCCACTGAACGATGTGACGCATGCGATGATGACGAC
GTATCTGGAGGAAGAGCGCCGATGCATCGATTCGCCATATGTCTTCCCGAGTGCCCGCGGCGACCTCATCTGCAAGACGA
CGATCAACCGTCACTTGAAACGCGCCGCCGAGGACGTGCTCGGCACATCCGTCACGTCGCATACGCTCCGGCACGCCTTC
ACGTCACATCTCTATGATATGGGCGTCAAGGAGACGACGTTGTCCGAGTTGCTCGGTCATAGCGAACCGAAGACGACCCG
ACGCTACATCCGCGTGCGCGAGGACCATCTGCGGGATGCGGTGGAACGACTGACGTTGGAGTGA

Upstream 100 bases:

>100_bases
ACTGAAGCATCGCTCGGGTACTCCCCGAGTCGCCTCCGCGCCTACAAGGCCGAACTCCAGCGGATGCTCCGTGAGGACAA
CGAGTAAGAGGAGAATGAAG

Downstream 100 bases:

>100_bases
ATACATGAACATAAAAAAATCCGGTCCACGAGCGACCGGATTTTTGATCATCTTTTCATCACATATACCTTCAATAGATA
TCCGATGATTCCAATTAATG

Product: integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MTLHMKDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYITALRSEGCQPVTINNYLSALR
GLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHRVIDAIDVPLYRTFLTLQLHTGMRINEVRQLTLDAIDLNAR
LLYIHESKTGKPRKVPLNDVTHAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAF
TSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERLTLE

Sequences:

>Translated_287_residues
MTLHMKDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYITALRSEGCQPVTINNYLSALR
GLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHRVIDAIDVPLYRTFLTLQLHTGMRINEVRQLTLDAIDLNAR
LLYIHESKTGKPRKVPLNDVTHAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAF
TSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERLTLE
>Mature_286_residues
TLHMKDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYITALRSEGCQPVTINNYLSALRG
LYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHRVIDAIDVPLYRTFLTLQLHTGMRINEVRQLTLDAIDLNARL
LYIHESKTGKPRKVPLNDVTHAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAFT
SHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERLTLE

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules [H]

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=249, Percent_Identity=29.718875502008, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790244, Length=222, Percent_Identity=25.2252252252252, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 33187; Mature: 33056

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLHMKDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYIT
CCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ALRSEGCQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHR
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHH
VIDAIDVPLYRTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVPLNDV
HHHHHCCHHHHHHHEEHHCCCCCHHHHHHHHHHEEECCEEEEEEEECCCCCCCCCCHHHH
THAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
TSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERLTLE
HHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TLHMKDAVDQHVHYLRMTGKSDNTVSQATYKFARFQKLMGQNRTLDDFKTRQDVMPYIT
CCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
ALRSEGCQPVTINNYLSALRGLYDWAITEQLVTHNPFHHLRVKVTERPPSDVPTPSDLHR
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCHHHHHH
VIDAIDVPLYRTFLTLQLHTGMRINEVRQLTLDAIDLNARLLYIHESKTGKPRKVPLNDV
HHHHHCCHHHHHHHEEHHCCCCCHHHHHHHHHHEEECCEEEEEEEECCCCCCCCCCHHHH
THAMMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTSVTSHTLRHAF
HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
TSHLYDMGVKETTLSELLGHSEPKTTRRYIRVREDHLRDAVERLTLE
HHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA