| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yvyE [H]
Identifier: 229916672
GI number: 229916672
Start: 892967
End: 893608
Strand: Direct
Name: yvyE [H]
Synonym: EAT1b_0944
Alternate gene names: 229916672
Gene position: 892967-893608 (Clockwise)
Preceding gene: 229916653
Following gene: 229916673
Centisome position: 29.77
GC content: 49.07
Gene sequence:
>642_bases ATGTCTATTGAGTCAAATTATACTATAAAACAAAGTGGAACATACGAAGTCGTTATCCAAAAATCAAAATTTATTGCTCA TTTCAAACGTGTCGAAACCGAGGAAGAGGCGCAGACGTTCATCCAAGCCATCAAGAAAGAGCATTGGAACGCAAATCATA ACTGTTCCGCCTACATCATCGGGGAACGAAACGAGCACCAGAAAGCGAATGACGACGGGGAGCCGAGCGGTACGGCCGGC ATGCCGATGCTCGAGGTGTTACGTAAACGCCACTTGAAAGATACGGTCGTCGTCGTGACACGTTATTTCGGTGGAATCAA GCTCGGTGGCGGCGGACTCATTCGTGCCTACGGTGGAACTGTGAGCGAAGGACTCGATGCGATCGGAATCGTCGAACGTC TACCGATGCAACAATTGACACTCACCGTCGACTATACATGGATTGGGAAAGTCGAAAATGAGTTGAGACAGTCTAGCTAC CTGCTCGATGACATCATCTACGCCGACCTTGTCACGTTTCATGTGTCGGTCCCCGTGGAAGAGACAGAGGAGGCACTCGC TTGGCTAACAGACATGACGAACGGTCAAGGTCAGCTTCAAACTCATACAATCCGCATCATCGAACGTGATTTCAAACGCT GA
Upstream 100 bases:
>100_bases ACATGAGAGATTTTCTATAATTCCATTCGCTATAAATAGCATATGTGCCTACTTGAATTCTAAAAAAAATATTCAAAAAT AGAAAGGAGAATTTTCAGAA
Downstream 100 bases:
>100_bases AACCCCTATACTAAAAGAAACGACTGAAATGAGGAAACAACATGGAAACACCCCCACGCAAGAAAAGATCACCTTGGAAA ATTGTCCTCATCGTGTTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MSIESNYTIKQSGTYEVVIQKSKFIAHFKRVETEEEAQTFIQAIKKEHWNANHNCSAYIIGERNEHQKANDDGEPSGTAG MPMLEVLRKRHLKDTVVVVTRYFGGIKLGGGGLIRAYGGTVSEGLDAIGIVERLPMQQLTLTVDYTWIGKVENELRQSSY LLDDIIYADLVTFHVSVPVEETEEALAWLTDMTNGQGQLQTHTIRIIERDFKR
Sequences:
>Translated_213_residues MSIESNYTIKQSGTYEVVIQKSKFIAHFKRVETEEEAQTFIQAIKKEHWNANHNCSAYIIGERNEHQKANDDGEPSGTAG MPMLEVLRKRHLKDTVVVVTRYFGGIKLGGGGLIRAYGGTVSEGLDAIGIVERLPMQQLTLTVDYTWIGKVENELRQSSY LLDDIIYADLVTFHVSVPVEETEEALAWLTDMTNGQGQLQTHTIRIIERDFKR >Mature_212_residues SIESNYTIKQSGTYEVVIQKSKFIAHFKRVETEEEAQTFIQAIKKEHWNANHNCSAYIIGERNEHQKANDDGEPSGTAGM PMLEVLRKRHLKDTVVVVTRYFGGIKLGGGGLIRAYGGTVSEGLDAIGIVERLPMQQLTLTVDYTWIGKVENELRQSSYL LDDIIYADLVTFHVSVPVEETEEALAWLTDMTNGQGQLQTHTIRIIERDFKR
Specific function: Unknown
COG id: COG1739
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the IMPACT family [H]
Homologues:
Organism=Escherichia coli, GI87082338, Length=183, Percent_Identity=35.5191256830601, Blast_Score=104, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR020568 - InterPro: IPR000640 - InterPro: IPR015796 - InterPro: IPR015269 - InterPro: IPR020569 - InterPro: IPR001498 [H]
Pfam domain/function: PF09186 DUF1949; PF01205 UPF0029 [H]
EC number: NA
Molecular weight: Translated: 24088; Mature: 23956
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: PS00910 UPF0029
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIESNYTIKQSGTYEVVIQKSKFIAHFKRVETEEEAQTFIQAIKKEHWNANHNCSAYII CCCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE GERNEHQKANDDGEPSGTAGMPMLEVLRKRHLKDTVVVVTRYFGGIKLGGGGLIRAYGGT CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEECCCC VSEGLDAIGIVERLPMQQLTLTVDYTWIGKVENELRQSSYLLDDIIYADLVTFHVSVPVE HHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHH ETEEALAWLTDMTNGQGQLQTHTIRIIERDFKR HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC >Mature Secondary Structure SIESNYTIKQSGTYEVVIQKSKFIAHFKRVETEEEAQTFIQAIKKEHWNANHNCSAYII CCCCCEEEECCCCEEEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEE GERNEHQKANDDGEPSGTAGMPMLEVLRKRHLKDTVVVVTRYFGGIKLGGGGLIRAYGGT CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCEEECCCCEEEECCCC VSEGLDAIGIVERLPMQQLTLTVDYTWIGKVENELRQSSYLLDDIIYADLVTFHVSVPVE HHHHHHHHHHHHHCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHH ETEEALAWLTDMTNGQGQLQTHTIRIIERDFKR HHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 3141378; 8313894 [H]