| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is comFA [H]
Identifier: 229916665
GI number: 229916665
Start: 884602
End: 885759
Strand: Reverse
Name: comFA [H]
Synonym: EAT1b_0937
Alternate gene names: 229916665
Gene position: 885759-884602 (Counterclockwise)
Preceding gene: 229916666
Following gene: 229916664
Centisome position: 29.53
GC content: 57.69
Gene sequence:
>1158_bases ATGGGAGAACTCATCGTCGCATCAAACGGGACGCGCGCCATCCGTTTTGGCATCTGCCAACGCTGTCTCAGCACGGACGT CCGGACGTTCATCTGTCATCACGGATCGTGTGCTTACTGCCGGAACTGTCTTTATCTTGGGCGTGTCTGTCGATGTGATT TTCTACAAGAGCGGGACATCACGACACCGCTTGAAACGACCGAACTGACGATGCCGTTCGAGCTCGCCCTCGACCAAACG CGGGTCGCAAATCAGCTGCTCACGTGGTGGGACGGACGGAGGACGGGGCTCGTGCATGCGGTATGTGGCGCCGGGAAGAC GGAGATGACGTTCCCTGTGATTGAGCGGGTCGTGAATGCAGGAAAGCGGGTATTGATCGTGTCCCCGAGGAAAGACGTCG CCATCGAATGGGTCGAACGGCTCGAACGAGCATTCACCGTGCCTGTCACGAGGCGATACGGGGGTGGGGAGAAAGACTCC ATCGGGATGATCACGGTGGCGACCGCGCCGTTACTCATGAATATCCGGGACGTCTTCGATTATGTGCTCGTCGATGAGTC CGATGCCTTCCCGTTTGCCTTTGACATAGCGTTATGGAATACGATTCGGCGGGTCGGGAGAGGTGTCTTCTTGTTCATCA CGGCAACCCCGACCGTTTGGCAACAGATGTTTCCGACGGTTCATCTGTCCCGGCGCTATCACGGATTTGATTTGCCGGTC CCGGCACTTGTCAAACAGTCCGACGAACGAATCGTAGAGTTCTGTCGACGTCACACCTTGAAACCACGTCTCTTGTTCGT GCCGACGAAGCCTGATTTGGAGCGGTACCGCGAGACATTAGAAGATGCGGGACTAACCTGTCGGACGGTATCGGCAGAGA CCGAGGAACGGACCGACGCCCTTCACTGGCTCCAAGAGACGAACGGCGTCGTCCTTGCGACCTCCATCTGGGAGCGGGGA ATGACGGTCCGGGACGTGCAGGTCGCCGTGGTGGAAAGTGAACATCGGCTCTTCTCGACACGAGGGCTCATTCAGATGGC AGGTCGGGCGGGGCGAAAACCGGACGCGCCGACAGGAGAGGTCTGTTTCTTTTACAAGGAGCGGACGTTCCGTCAAGATG TTGCTATCCGGAAAATCAAGGAGGCGAATCGGCGATGA
Upstream 100 bases:
>100_bases GTCGGGTCCTATTTGTGTAGTCGACCTATGCTGTTTTAGATAAGTCGAATCGCATTTATATAGCCGTTTTGGTAGCGTGA TGACAAAAAGGAGTCAGGTT
Downstream 100 bases:
>100_bases GATGCCTTATTTGTCATGAGTCGATGACCGTCCCGTGGACTCCTGCCACATTATGGCGACGAGACTGGGTGTGTCCTTCT TGCGAGTCGAAACTGACGCC
Product: helicase domain protein
Products: NA
Alternate protein names: ATP-dependent helicase ComFA [H]
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MGELIVASNGTRAIRFGICQRCLSTDVRTFICHHGSCAYCRNCLYLGRVCRCDFLQERDITTPLETTELTMPFELALDQT RVANQLLTWWDGRRTGLVHAVCGAGKTEMTFPVIERVVNAGKRVLIVSPRKDVAIEWVERLERAFTVPVTRRYGGGEKDS IGMITVATAPLLMNIRDVFDYVLVDESDAFPFAFDIALWNTIRRVGRGVFLFITATPTVWQQMFPTVHLSRRYHGFDLPV PALVKQSDERIVEFCRRHTLKPRLLFVPTKPDLERYRETLEDAGLTCRTVSAETEERTDALHWLQETNGVVLATSIWERG MTVRDVQVAVVESEHRLFSTRGLIQMAGRAGRKPDAPTGEVCFFYKERTFRQDVAIRKIKEANRR
Sequences:
>Translated_385_residues MGELIVASNGTRAIRFGICQRCLSTDVRTFICHHGSCAYCRNCLYLGRVCRCDFLQERDITTPLETTELTMPFELALDQT RVANQLLTWWDGRRTGLVHAVCGAGKTEMTFPVIERVVNAGKRVLIVSPRKDVAIEWVERLERAFTVPVTRRYGGGEKDS IGMITVATAPLLMNIRDVFDYVLVDESDAFPFAFDIALWNTIRRVGRGVFLFITATPTVWQQMFPTVHLSRRYHGFDLPV PALVKQSDERIVEFCRRHTLKPRLLFVPTKPDLERYRETLEDAGLTCRTVSAETEERTDALHWLQETNGVVLATSIWERG MTVRDVQVAVVESEHRLFSTRGLIQMAGRAGRKPDAPTGEVCFFYKERTFRQDVAIRKIKEANRR >Mature_384_residues GELIVASNGTRAIRFGICQRCLSTDVRTFICHHGSCAYCRNCLYLGRVCRCDFLQERDITTPLETTELTMPFELALDQTR VANQLLTWWDGRRTGLVHAVCGAGKTEMTFPVIERVVNAGKRVLIVSPRKDVAIEWVERLERAFTVPVTRRYGGGEKDSI GMITVATAPLLMNIRDVFDYVLVDESDAFPFAFDIALWNTIRRVGRGVFLFITATPTVWQQMFPTVHLSRRYHGFDLPVP ALVKQSDERIVEFCRRHTLKPRLLFVPTKPDLERYRETLEDAGLTCRTVSAETEERTDALHWLQETNGVVLATSIWERGM TVRDVQVAVVESEHRLFSTRGLIQMAGRAGRKPDAPTGEVCFFYKERTFRQDVAIRKIKEANRR
Specific function: Involved in transformation (competence for DNA uptake). Required for DNA uptake but not for binding. May provide the driving force for transport of DNA through an aqueous channel [H]
COG id: COG4098
COG function: function code L; Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR006935 [H]
Pfam domain/function: PF00271 Helicase_C; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 44006; Mature: 43875
Theoretical pI: Translated: 8.55; Mature: 8.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGELIVASNGTRAIRFGICQRCLSTDVRTFICHHGSCAYCRNCLYLGRVCRCDFLQERDI CCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC TTPLETTELTMPFELALDQTRVANQLLTWWDGRRTGLVHAVCGAGKTEMTFPVIERVVNA CCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCC GKRVLIVSPRKDVAIEWVERLERAFTVPVTRRYGGGEKDSIGMITVATAPLLMNIRDVFD CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH YVLVDESDAFPFAFDIALWNTIRRVGRGVFLFITATPTVWQQMFPTVHLSRRYHGFDLPV EEEECCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHEECCCCCCCCCCH PALVKQSDERIVEFCRRHTLKPRLLFVPTKPDLERYRETLEDAGLTCRTVSAETEERTDA HHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHH LHWLQETNGVVLATSIWERGMTVRDVQVAVVESEHRLFSTRGLIQMAGRAGRKPDAPTGE HHHHHHCCCEEEEEEHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCC VCFFYKERTFRQDVAIRKIKEANRR EEEEEEHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure GELIVASNGTRAIRFGICQRCLSTDVRTFICHHGSCAYCRNCLYLGRVCRCDFLQERDI CCEEEECCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC TTPLETTELTMPFELALDQTRVANQLLTWWDGRRTGLVHAVCGAGKTEMTFPVIERVVNA CCCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHHHCC GKRVLIVSPRKDVAIEWVERLERAFTVPVTRRYGGGEKDSIGMITVATAPLLMNIRDVFD CCEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHH YVLVDESDAFPFAFDIALWNTIRRVGRGVFLFITATPTVWQQMFPTVHLSRRYHGFDLPV EEEECCCCCCCEEHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCHHEECCCCCCCCCCH PALVKQSDERIVEFCRRHTLKPRLLFVPTKPDLERYRETLEDAGLTCRTVSAETEERTDA HHHHCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHH LHWLQETNGVVLATSIWERGMTVRDVQVAVVESEHRLFSTRGLIQMAGRAGRKPDAPTGE HHHHHHCCCEEEEEEHHHCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCC VCFFYKERTFRQDVAIRKIKEANRR EEEEEEHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8412657; 9384377 [H]