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The map label for this gene is sufD [H]

Identifier: 229916533

GI number: 229916533

Start: 757720

End: 758988

Strand: Reverse

Name: sufD [H]

Synonym: EAT1b_0804

Alternate gene names: 229916533

Gene position: 758988-757720 (Counterclockwise)

Preceding gene: 229916534

Following gene: 229916532

Centisome position: 25.3

GC content: 50.99

Gene sequence:

>1269_bases
ATGACCGTACAATTTGAATTGGATGCACAAGCGTTGTCGGCACGTGCAGAAGCGCTCGGCGGACCAGCATGGATGGTCAA
CCGTCGTAAAGAGGCAGCAGAACTTGCGCCGACACTTGCTTTGCCAAAAGTTGAAAAGATTAAAATTGATAAGTGGGACT
TCGCAGCGGGTGATGTCAATCTCGGACCGAAAGACGGTTTGACAGCTGACATCGAATCACTCCTCGGAGACCACCGGACA
AACGTGCTCGTTGAACGCAATGGTCATGTCGTCTATAACGAATTGTCGATGCCAGAAGGCGTCTTGTTCATGGGAATCAA
AGAAGCGATGGAGCAACATCCTGAGCTCGTTGAGAAATACTTCATGACGGAAGGCGTACGTGTCGATGAAGAACGTCTTT
CGGCGCTGAACGCTGCCCTCACAAACGGTGGGGCGTTCATTTACGTACCGAAAAACACACAATTGAAAGATCCGCTTCAA
GCGATCTTCACGATGGAACAGGCGAACGGTGCCCTCTATCACCACACGATCCTCGTCGCTGACGAAGGCAGTGAAGTGAC
ATACATCGAAAACTTCCTTTCTGGTACGAACGAACCGCACACGGTCAACGTCGTGACGGAAGTATTCGCTGGAGAGAACG
CAAAAGTCGTCTTCGGTGGTGTCGATCAACTCGCTGAATCTGCACTTACGTTCATGAACCGTCGCGGCGTCGTCTATGCG
AACGGTCGTCTTGATTGGGCGCTCGGTCACATGAACGACGGGAACTCGGTCGTTGAGACGAAGACTCACCTCGTCGGAGA
CAACACGTATTCGGATACAAAAGCTGTGACAATCGGTCGCGGTGCACAAAAACAAAACTTCAACATCCGTACCGACCACT
TCGGAAAAGCATCTGAAGGGTTCATCTTGATTCACGGTGTCCAAAAAGACGCAGCCACTGCGATCTTCAGCGGGACATCG
ATGATTCACCACGGTGCGTCAAAATCAAACGGTGTGCAAACAGAGCGCGTCTTGATGCTCTCTGAAAAAGCTCGTGGGGA
TGCCAACCCGATTCTTCTCATCGATGAAGATGATGTTATGGCAGGTCACGCGGCATCAGTCGGCCGTGTCGATGATGTTC
AATTGTACTACTTGATGAGCCGTGGTTTGTCTCGCCAAGAGGCAGAGCGTTTAATCATCCACGGATTCTTGACGCCTGTC
GTCGAAGAACTCGCAATCGATTCGGTCAAAGACCGTCTCCGCGAAGTCATCGAAGGGAAAGTACGTTAA

Upstream 100 bases:

>100_bases
TGGTAAAGAGCTCGCACAACGACTCGAGGCAGAAGGTTACGACTGGGTGAAGCAAGAACTCGGAATGACAGTAGACACAG
AAGCGTAAGGAGGCTGTACG

Downstream 100 bases:

>100_bases
GATGTTGAACGCCTCGATTCGTGAACAGTTTCCGATTTTAGATCAGGAAATCAATGGACACCCGCTCGTTTATCTTGATA
GCGCGGCGAGCTCACAAAAG

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTVQFELDAQALSARAEALGGPAWMVNRRKEAAELAPTLALPKVEKIKIDKWDFAAGDVNLGPKDGLTADIESLLGDHRT
NVLVERNGHVVYNELSMPEGVLFMGIKEAMEQHPELVEKYFMTEGVRVDEERLSALNAALTNGGAFIYVPKNTQLKDPLQ
AIFTMEQANGALYHHTILVADEGSEVTYIENFLSGTNEPHTVNVVTEVFAGENAKVVFGGVDQLAESALTFMNRRGVVYA
NGRLDWALGHMNDGNSVVETKTHLVGDNTYSDTKAVTIGRGAQKQNFNIRTDHFGKASEGFILIHGVQKDAATAIFSGTS
MIHHGASKSNGVQTERVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDDVQLYYLMSRGLSRQEAERLIIHGFLTPV
VEELAIDSVKDRLREVIEGKVR

Sequences:

>Translated_422_residues
MTVQFELDAQALSARAEALGGPAWMVNRRKEAAELAPTLALPKVEKIKIDKWDFAAGDVNLGPKDGLTADIESLLGDHRT
NVLVERNGHVVYNELSMPEGVLFMGIKEAMEQHPELVEKYFMTEGVRVDEERLSALNAALTNGGAFIYVPKNTQLKDPLQ
AIFTMEQANGALYHHTILVADEGSEVTYIENFLSGTNEPHTVNVVTEVFAGENAKVVFGGVDQLAESALTFMNRRGVVYA
NGRLDWALGHMNDGNSVVETKTHLVGDNTYSDTKAVTIGRGAQKQNFNIRTDHFGKASEGFILIHGVQKDAATAIFSGTS
MIHHGASKSNGVQTERVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDDVQLYYLMSRGLSRQEAERLIIHGFLTPV
VEELAIDSVKDRLREVIEGKVR
>Mature_421_residues
TVQFELDAQALSARAEALGGPAWMVNRRKEAAELAPTLALPKVEKIKIDKWDFAAGDVNLGPKDGLTADIESLLGDHRTN
VLVERNGHVVYNELSMPEGVLFMGIKEAMEQHPELVEKYFMTEGVRVDEERLSALNAALTNGGAFIYVPKNTQLKDPLQA
IFTMEQANGALYHHTILVADEGSEVTYIENFLSGTNEPHTVNVVTEVFAGENAKVVFGGVDQLAESALTFMNRRGVVYAN
GRLDWALGHMNDGNSVVETKTHLVGDNTYSDTKAVTIGRGAQKQNFNIRTDHFGKASEGFILIHGVQKDAATAIFSGTSM
IHHGASKSNGVQTERVLMLSEKARGDANPILLIDEDDVMAGHAASVGRVDDVQLYYLMSRGLSRQEAERLIIHGFLTPVV
EELAIDSVKDRLREVIEGKVR

Specific function: The sufBCD complex acts synergistically with sufE to stimulate the cysteine desulfurase activity of sufS. The sufBCD complex contributes to the assembly or repair of oxygen-labile iron-sulfur clusters under oxidative stress. May facilitate iron uptake fro

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=326, Percent_Identity=26.3803680981595, Blast_Score=128, Evalue=7e-31,
Organism=Escherichia coli, GI1787971, Length=260, Percent_Identity=28.4615384615385, Blast_Score=86, Evalue=5e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46182; Mature: 46051

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVQFELDAQALSARAEALGGPAWMVNRRKEAAELAPTLALPKVEKIKIDKWDFAAGDVN
CEEEEEECHHHHHHHHHHCCCCCEEECCHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCC
LGPKDGLTADIESLLGDHRTNVLVERNGHVVYNELSMPEGVLFMGIKEAMEQHPELVEKY
CCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCEEEHHHHHHHHHCHHHHHHH
FMTEGVRVDEERLSALNAALTNGGAFIYVPKNTQLKDPLQAIFTMEQANGALYHHTILVA
HHHCCCEECHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
DEGSEVTYIENFLSGTNEPHTVNVVTEVFAGENAKVVFGGVDQLAESALTFMNRRGVVYA
CCCCCCHHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
NGRLDWALGHMNDGNSVVETKTHLVGDNTYSDTKAVTIGRGAQKQNFNIRTDHFGKASEG
CCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCCC
FILIHGVQKDAATAIFSGTSMIHHGASKSNGVQTERVLMLSEKARGDANPILLIDEDDVM
EEEEEECCCCHHHHHCCCCHHHCCCCCCCCCCCHHEEEEEEHHCCCCCCCEEEECCCCCC
AGHAASVGRVDDVQLYYLMSRGLSRQEAERLIIHGFLTPVVEELAIDSVKDRLREVIEGK
CCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VR
CC
>Mature Secondary Structure 
TVQFELDAQALSARAEALGGPAWMVNRRKEAAELAPTLALPKVEKIKIDKWDFAAGDVN
EEEEEECHHHHHHHHHHCCCCCEEECCHHHHHHHCCHHCCCCCCEEEEECCCCCCCCCC
LGPKDGLTADIESLLGDHRTNVLVERNGHVVYNELSMPEGVLFMGIKEAMEQHPELVEKY
CCCCCCCHHHHHHHHCCCCCEEEEEECCCEEEEECCCCCCEEEHHHHHHHHHCHHHHHHH
FMTEGVRVDEERLSALNAALTNGGAFIYVPKNTQLKDPLQAIFTMEQANGALYHHTILVA
HHHCCCEECHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEEEE
DEGSEVTYIENFLSGTNEPHTVNVVTEVFAGENAKVVFGGVDQLAESALTFMNRRGVVYA
CCCCCCHHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEECCHHHHHHHHHHHHHCCCEEEE
NGRLDWALGHMNDGNSVVETKTHLVGDNTYSDTKAVTIGRGAQKQNFNIRTDHFGKASEG
CCEEEEEEECCCCCCCEEEEEEEEECCCCCCCCEEEEECCCCCCCCCCEECCCCCCCCCC
FILIHGVQKDAATAIFSGTSMIHHGASKSNGVQTERVLMLSEKARGDANPILLIDEDDVM
EEEEEECCCCHHHHHCCCCHHHCCCCCCCCCCCHHEEEEEEHHCCCCCCCEEEECCCCCC
AGHAASVGRVDDVQLYYLMSRGLSRQEAERLIIHGFLTPVVEELAIDSVKDRLREVIEGK
CCCCCCCCCCCCCEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VR
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]