| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yunD [H]
Identifier: 229916520
GI number: 229916520
Start: 743973
End: 745319
Strand: Reverse
Name: yunD [H]
Synonym: EAT1b_0790
Alternate gene names: 229916520
Gene position: 745319-743973 (Counterclockwise)
Preceding gene: 229916521
Following gene: 229916519
Centisome position: 24.84
GC content: 51.45
Gene sequence:
>1347_bases ATGGCCATGACGACACTGACTATTTTTCATTACAACGATCTTCATTCAAAGTTCGACCAATGGCCGAAACTTGTTTCATT TCTAGAAGAACATCGGACGGACGACACGCTGTACTTTGATTTAGGGGATCATGCCGACCGTACCCATCCGGCGACGGAAG TGACACGTGGGAAGTTGAATGTTCGTTTGCTCGAGCGACTTCGTCCGACAGCCGTCACCATCGGGAACAACGAAGGGATT ACCTTTCCTCATGATTGGCTGGCCGAACTGTATGACGAAGCGACATTTCCTATCTTACTTGGGAATGTATATGAAGCAGA CGGGTCACGACCGAATTGGGTCGATGAGACGCTCGTTCTCGAGCAAGATGGGTTCCACATCGGCCTGTTTGGTGTGACCG CTCCATATGAAGAGTTATACCCAGAGCTCGGCTGGCAGATTGAATCGCCTTACGAGGCGGCGGAGCGAGCGTTGAAACAG TTGGCGCATTGTGATGTCATCATCGCGCTCAGTCACCTTGGGTTCTTTGGAGATGAGCGATTAGCTGAAAGGTTTCCTGA AATCGACGTCATTCTCGGTGCGCATACACATCACGTCTTAGATGAAGGTGTGATGACGAACGGTGTGTTGATTGCACAAG CCGGAAAGTATGGGAAGTACGTCGGAGAAGTCACACTGACGCTTGGCGAGTCAGGAGTCGTATCGAAAGAAGCGCGCCTT CATGAACTGTCTCAGCAATCGGATAGTCCGGACACATTGGCCTTGTTGCATACAGAAGGGGCAGATGCCGAACGCCTTCT TGATGTCACGATTGCGGAGACGGATGGATACACCTCTGATTGGTTCGGACCTTCTCCACTGGGTGACCTGCTCGTTGAAG GCATGGTCGAATGGTGTGCGGCGGATGTGGGGATCATCCCATCTGGCGTTGTGCTAGAAGGACTTGCACCGGGTGGGGTG ACGCTCAACATGTTGCATCGGATCTGTCCGCATCCAATCAATCCTTGTGTGCTGACATTGGACGGGGAGACGTTGGCGCG TTTCCTTCACGATGCCAATGAAGAAACGTTCACGACTATGCATGTCAGAGGTCTCGGCTTCAGAGGTACCGTTCTCGGAG AACCGAGTCTCTATCAAATCGAACAGCGGGACGGTCAGACATATGTAATGGGGGAACGATTGGATTTAAATCGGACATAT CGCGTCGCGACGGTCGATATGTTGACGTTCGGTCCGCTCCTTCCTTATTTGGCAGACCAACCGAAGCGATATTTCATGCC CGAACTTCTGCGGGATGTATTACGAGAAACAATCGTCGCCCGTCATGAAGTGATTCGAAAAGGATAG
Upstream 100 bases:
>100_bases GGCCGGGGATGCGGCACCGAATGCGAAGCGACTCATTGAGATCCTTGGCCTCGAGTATGAACTCGCACCGAGACAAATCA GTTTGTTTTAGAAGGAAGGG
Downstream 100 bases:
>100_bases AGCGCATCGACGGGGGCATGCTATGATAACAGAGTGGAGGTGGGAACGATGATTCGAGTGAATCGCCACGGATATACCGT CGTGGAAGAAAAGCGGGACG
Product: metallophosphoesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 448; Mature: 447
Protein sequence:
>448_residues MAMTTLTIFHYNDLHSKFDQWPKLVSFLEEHRTDDTLYFDLGDHADRTHPATEVTRGKLNVRLLERLRPTAVTIGNNEGI TFPHDWLAELYDEATFPILLGNVYEADGSRPNWVDETLVLEQDGFHIGLFGVTAPYEELYPELGWQIESPYEAAERALKQ LAHCDVIIALSHLGFFGDERLAERFPEIDVILGAHTHHVLDEGVMTNGVLIAQAGKYGKYVGEVTLTLGESGVVSKEARL HELSQQSDSPDTLALLHTEGADAERLLDVTIAETDGYTSDWFGPSPLGDLLVEGMVEWCAADVGIIPSGVVLEGLAPGGV TLNMLHRICPHPINPCVLTLDGETLARFLHDANEETFTTMHVRGLGFRGTVLGEPSLYQIEQRDGQTYVMGERLDLNRTY RVATVDMLTFGPLLPYLADQPKRYFMPELLRDVLRETIVARHEVIRKG
Sequences:
>Translated_448_residues MAMTTLTIFHYNDLHSKFDQWPKLVSFLEEHRTDDTLYFDLGDHADRTHPATEVTRGKLNVRLLERLRPTAVTIGNNEGI TFPHDWLAELYDEATFPILLGNVYEADGSRPNWVDETLVLEQDGFHIGLFGVTAPYEELYPELGWQIESPYEAAERALKQ LAHCDVIIALSHLGFFGDERLAERFPEIDVILGAHTHHVLDEGVMTNGVLIAQAGKYGKYVGEVTLTLGESGVVSKEARL HELSQQSDSPDTLALLHTEGADAERLLDVTIAETDGYTSDWFGPSPLGDLLVEGMVEWCAADVGIIPSGVVLEGLAPGGV TLNMLHRICPHPINPCVLTLDGETLARFLHDANEETFTTMHVRGLGFRGTVLGEPSLYQIEQRDGQTYVMGERLDLNRTY RVATVDMLTFGPLLPYLADQPKRYFMPELLRDVLRETIVARHEVIRKG >Mature_447_residues AMTTLTIFHYNDLHSKFDQWPKLVSFLEEHRTDDTLYFDLGDHADRTHPATEVTRGKLNVRLLERLRPTAVTIGNNEGIT FPHDWLAELYDEATFPILLGNVYEADGSRPNWVDETLVLEQDGFHIGLFGVTAPYEELYPELGWQIESPYEAAERALKQL AHCDVIIALSHLGFFGDERLAERFPEIDVILGAHTHHVLDEGVMTNGVLIAQAGKYGKYVGEVTLTLGESGVVSKEARLH ELSQQSDSPDTLALLHTEGADAERLLDVTIAETDGYTSDWFGPSPLGDLLVEGMVEWCAADVGIIPSGVVLEGLAPGGVT LNMLHRICPHPINPCVLTLDGETLARFLHDANEETFTTMHVRGLGFRGTVLGEPSLYQIEQRDGQTYVMGERLDLNRTYR VATVDMLTFGPLLPYLADQPKRYFMPELLRDVLRETIVARHEVIRKG
Specific function: Unknown
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the metallophosphoesterase superfamily [H]
Homologues:
Organism=Drosophila melanogaster, GI28573524, Length=441, Percent_Identity=24.9433106575964, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI19922446, Length=427, Percent_Identity=22.248243559719, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI24654424, Length=427, Percent_Identity=22.248243559719, Blast_Score=76, Evalue=4e-14, Organism=Drosophila melanogaster, GI19922444, Length=287, Percent_Identity=24.390243902439, Blast_Score=71, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006179 - InterPro: IPR011240 [H]
Pfam domain/function: PF02872 5_nucleotid_C [H]
EC number: NA
Molecular weight: Translated: 50057; Mature: 49926
Theoretical pI: Translated: 4.51; Mature: 4.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMTTLTIFHYNDLHSKFDQWPKLVSFLEEHRTDDTLYFDLGDHADRTHPATEVTRGKLN CCEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCHH VRLLERLRPTAVTIGNNEGITFPHDWLAELYDEATFPILLGNVYEADGSRPNWVDETLVL HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCEEEE EQDGFHIGLFGVTAPYEELYPELGWQIESPYEAAERALKQLAHCDVIIALSHLGFFGDER ECCCCEEEEEECCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LAERFPEIDVILGAHTHHVLDEGVMTNGVLIAQAGKYGKYVGEVTLTLGESGVVSKEARL HHHHCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCHHHHH HELSQQSDSPDTLALLHTEGADAERLLDVTIAETDGYTSDWFGPSPLGDLLVEGMVEWCA HHHHHCCCCCCEEEEEEECCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH ADVGIIPSGVVLEGLAPGGVTLNMLHRICPHPINPCVLTLDGETLARFLHDANEETFTTM HCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCEEEEE HVRGLGFRGTVLGEPSLYQIEQRDGQTYVMGERLDLNRTYRVATVDMLTFGPLLPYLADQ EEECCCCCCEEECCCCEEEEECCCCCEEEEECEECCCCEEEEEEEHHHHHHHHHHHHCCC PKRYFMPELLRDVLRETIVARHEVIRKG CHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AMTTLTIFHYNDLHSKFDQWPKLVSFLEEHRTDDTLYFDLGDHADRTHPATEVTRGKLN CEEEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCHH VRLLERLRPTAVTIGNNEGITFPHDWLAELYDEATFPILLGNVYEADGSRPNWVDETLVL HHHHHHCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEECCEEECCCCCCCCCCCEEEE EQDGFHIGLFGVTAPYEELYPELGWQIESPYEAAERALKQLAHCDVIIALSHLGFFGDER ECCCCEEEEEECCCCHHHHHHHHCCEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH LAERFPEIDVILGAHTHHVLDEGVMTNGVLIAQAGKYGKYVGEVTLTLGESGVVSKEARL HHHHCCCEEEEECCCHHHHHHCCCCCCCEEEEECCCCCCEEEEEEEEECCCCCCCHHHHH HELSQQSDSPDTLALLHTEGADAERLLDVTIAETDGYTSDWFGPSPLGDLLVEGMVEWCA HHHHHCCCCCCEEEEEEECCCCHHHEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH ADVGIIPSGVVLEGLAPGGVTLNMLHRICPHPINPCVLTLDGETLARFLHDANEETFTTM HCCCCCCCCCEEECCCCCCHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHCCCCCEEEEE HVRGLGFRGTVLGEPSLYQIEQRDGQTYVMGERLDLNRTYRVATVDMLTFGPLLPYLADQ EEECCCCCCEEECCCCEEEEECCCCCEEEEECEECCCCEEEEEEEHHHHHHHHHHHHCCC PKRYFMPELLRDVLRETIVARHEVIRKG CHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]