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The map label for this gene is rnhC [H]

Identifier: 229916367

GI number: 229916367

Start: 589560

End: 590477

Strand: Direct

Name: rnhC [H]

Synonym: EAT1b_0637

Alternate gene names: 229916367

Gene position: 589560-590477 (Clockwise)

Preceding gene: 229916363

Following gene: 229916368

Centisome position: 19.65

GC content: 46.73

Gene sequence:

>918_bases
ATGTTGGGCAACCAAGTCATCAAGCTATCAACCGCATCACAAGAAAAACTAAAAAAGATGTACCATGAGTATGCAGTCGC
GCCACCACCATATGCGACATTCAGCGCCAAGACACCAGGATTTGTCGTAACGATTTATCAATCAGGGAAAGTGATGTTCC
AAGGAAAAGATGCCGAGACCGAGGCAGTGAAATGGGGAACACCCGCCGAGAAGAAACAAGCATCCACACCGAACACCGTC
CTACCTGAAGGATTTTCAAGTTGGTCTGTCGTTGGAAGCGACGAGGTCGGAAAAGGGGACTATTTTGGACCACTCGTCGT
CGTAGCGGCTTTTGTCTCACGCGATCAAATCGCACTCGTCAAAGAACTCGGCGTGAAAGATTCAAAACAGTTATCCGACC
CTGAAATCATCCGGATTGCGAAGGATTTACACGCTACGATTCCTTATCAAAAAGCGACACTGCATAATCCAACATACAAC
AACATGCAACGTACGATGACACAAGGTAAAATGACTGCCATCGCCCATAATGCTGCGCTTCGAGCGTTGCTTGAGAAACT
CGGACAAAAACCCGATGCCATTCTCATCGATCAGTTCGCAGAGAAGTCGGTCTATTATCAACATTTGCGGGCAGAACGCG
ATATCGTGCGCGACGATGTCTACTTTTCCACAAAAGCCGAAGGACTTCATGTCGCCGTCGCAGCTGCATCCATTTTAGCT
CGCGCTTTCTTCTTAAAAGAAATGGACAAACTAAGTAAACAAGCAGGATTGACCCTTCCAAAAGGTGCAGGGGCCAAAGT
CGACCAAGTCGCCGCTCAAATTATCCGACGTCATGGTCAGGATTATTTACAAAAGATTGCTAAAGTCCATTTTGCGAATA
CAAAGAAAGCCCTCAACTTGAATGAACGTCGTTTGTAG

Upstream 100 bases:

>100_bases
TTTTCTCTACTCACCTCCCTATACGATAAAACCTCATCTTCGGTTTCAAAAATTCATAAAAAAATGTAAAATGAATTTGC
CAGACAGAAAGGAAGTGCTC

Downstream 100 bases:

>100_bases
AGCTTCGACATCAAGTATGATATACTCATTTTATGGTTAAATGAACTTAAAATTTTTGGAGGATAGCGTTCATGTTGCAT
TATAAAACCTACACGATTAG

Product: ribonuclease HIII

Products: NA

Alternate protein names: RNase HIII [H]

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MLGNQVIKLSTASQEKLKKMYHEYAVAPPPYATFSAKTPGFVVTIYQSGKVMFQGKDAETEAVKWGTPAEKKQASTPNTV
LPEGFSSWSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATIPYQKATLHNPTYN
NMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQHLRAERDIVRDDVYFSTKAEGLHVAVAAASILA
RAFFLKEMDKLSKQAGLTLPKGAGAKVDQVAAQIIRRHGQDYLQKIAKVHFANTKKALNLNERRL

Sequences:

>Translated_305_residues
MLGNQVIKLSTASQEKLKKMYHEYAVAPPPYATFSAKTPGFVVTIYQSGKVMFQGKDAETEAVKWGTPAEKKQASTPNTV
LPEGFSSWSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATIPYQKATLHNPTYN
NMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQHLRAERDIVRDDVYFSTKAEGLHVAVAAASILA
RAFFLKEMDKLSKQAGLTLPKGAGAKVDQVAAQIIRRHGQDYLQKIAKVHFANTKKALNLNERRL
>Mature_305_residues
MLGNQVIKLSTASQEKLKKMYHEYAVAPPPYATFSAKTPGFVVTIYQSGKVMFQGKDAETEAVKWGTPAEKKQASTPNTV
LPEGFSSWSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALVKELGVKDSKQLSDPEIIRIAKDLHATIPYQKATLHNPTYN
NMQRTMTQGKMTAIAHNAALRALLEKLGQKPDAILIDQFAEKSVYYQHLRAERDIVRDDVYFSTKAEGLHVAVAAASILA
RAFFLKEMDKLSKQAGLTLPKGAGAKVDQVAAQIIRRHGQDYLQKIAKVHFANTKKALNLNERRL

Specific function: Endonuclease that specifically degrades the RNA of RNA- DNA hybrids [H]

COG id: COG1039

COG function: function code L; Ribonuclease HIII

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNase HII family. RnhC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001352
- InterPro:   IPR004641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF01351 RNase_HII [H]

EC number: =3.1.26.4 [H]

Molecular weight: Translated: 33657; Mature: 33657

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGNQVIKLSTASQEKLKKMYHEYAVAPPPYATFSAKTPGFVVTIYQSGKVMFQGKDAET
CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEECCEEEEECCCCCC
EAVKWGTPAEKKQASTPNTVLPEGFSSWSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALV
CEEECCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHH
KELGVKDSKQLSDPEIIRIAKDLHATIPYQKATLHNPTYNNMQRTMTQGKMTAIAHNAAL
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RALLEKLGQKPDAILIDQFAEKSVYYQHLRAERDIVRDDVYFSTKAEGLHVAVAAASILA
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHH
RAFFLKEMDKLSKQAGLTLPKGAGAKVDQVAAQIIRRHGQDYLQKIAKVHFANTKKALNL
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHCCC
NERRL
HHCCC
>Mature Secondary Structure
MLGNQVIKLSTASQEKLKKMYHEYAVAPPPYATFSAKTPGFVVTIYQSGKVMFQGKDAET
CCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEEECCEEEEECCCCCC
EAVKWGTPAEKKQASTPNTVLPEGFSSWSVVGSDEVGKGDYFGPLVVVAAFVSRDQIALV
CEEECCCCCHHHCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHH
KELGVKDSKQLSDPEIIRIAKDLHATIPYQKATLHNPTYNNMQRTMTQGKMTAIAHNAAL
HHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
RALLEKLGQKPDAILIDQFAEKSVYYQHLRAERDIVRDDVYFSTKAEGLHVAVAAASILA
HHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHHHH
RAFFLKEMDKLSKQAGLTLPKGAGAKVDQVAAQIIRRHGQDYLQKIAKVHFANTKKALNL
HHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHCCC
NERRL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA