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The map label for this gene is ydeE [H]

Identifier: 229916141

GI number: 229916141

Start: 372958

End: 373833

Strand: Direct

Name: ydeE [H]

Synonym: EAT1b_0410

Alternate gene names: 229916141

Gene position: 372958-373833 (Clockwise)

Preceding gene: 229916140

Following gene: 229916146

Centisome position: 12.43

GC content: 40.64

Gene sequence:

>876_bases
ATGGTAAAAGCATTAAATGAGCTGATGGACTTTATCGAACAGCACTTAACGGAAGAACTTTTAGATTCAGAAATCACAAA
AATCACCGGACTATCTGCTCACCATTTTAAGAGGATGTTTTCGTATATGTCAGGAATGACACTTCACACTTATATACGAA
ATCGACGGTTTTCTATCGCAAATGAAAAATTGGTTCATGGTTCAAGCGTAACAGAAATCGCATATCTCTATGGATATCAA
TCGGTCGAAGGGTTTTCCAGAGCGTTTCGAGATTGGTCTGGTCATTTGCCTTCTGAAGTCATGAAGAATCACTTTCAAAA
GTCGTTCCCTCGCTTCACGTTTTATATCGATATAAAAGGAGGAACATCAATGGAGTTCAAGTTAGAAGAGAAAGAAGCTT
TTCAAATCGTTGGAGTTTCAAAGCGTGTCCCTATTCAATTCGAGGGAGTCAACGAAGAAATCATGGAACTAGCGAAGTCG
ATTACGGAAGAGCAACGGGCTCACATGCATGAATTGGGCAATTTATATCCGCATCGTGCCTTGAACGCATCATTCAATTT
TGATGACGGTCACTTAGAAGAAGAAGGTTATTTGACACATATGATCGGTTTCGCCACGACAAGAGAAATTAAGTATGACG
ATCTCGAAGTGATCTCAATCCCAAAAAGTTTATGGGCAATCTTCCCGAACACTGGACCATTCCCAAACACTCTACAAGAG
ACGATGGCAAGAACCTATGCAGAATGGTTACCTTCTTCGGGATACGCACTTCAAGACTTGCCAAGCATTTCATTTAGCAA
AATAGAAACAGGATATGACAACGTATATAGCGAGGTTTGGGTCCCTGTGAAGGTTAGAGAAGAGCCGGAATCATAA

Upstream 100 bases:

>100_bases
AAATGCTTAAACTAATACGACCCGATCTTTCCTGCACGCAAATTATCGAGATGAGTTGGAAGAAATCCGATATGGTCAAA
CTATGAAGGAGGAGAACTTG

Downstream 100 bases:

>100_bases
AGATATCTCCGCTATTATGATTTATCAAAAAGAGTATGGAGCATCCCAAATTGAGGGATGCTCCATACTCTTTAATATAT
CTCTTCTATTAGTAGAGCGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MVKALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIANEKLVHGSSVTEIAYLYGYQ
SVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKGGTSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKS
ITEEQRAHMHELGNLYPHRALNASFNFDDGHLEEEGYLTHMIGFATTREIKYDDLEVISIPKSLWAIFPNTGPFPNTLQE
TMARTYAEWLPSSGYALQDLPSISFSKIETGYDNVYSEVWVPVKVREEPES

Sequences:

>Translated_291_residues
MVKALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIANEKLVHGSSVTEIAYLYGYQ
SVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKGGTSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKS
ITEEQRAHMHELGNLYPHRALNASFNFDDGHLEEEGYLTHMIGFATTREIKYDDLEVISIPKSLWAIFPNTGPFPNTLQE
TMARTYAEWLPSSGYALQDLPSISFSKIETGYDNVYSEVWVPVKVREEPES
>Mature_291_residues
MVKALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIANEKLVHGSSVTEIAYLYGYQ
SVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKGGTSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKS
ITEEQRAHMHELGNLYPHRALNASFNFDDGHLEEEGYLTHMIGFATTREIKYDDLEVISIPKSLWAIFPNTGPFPNTLQE
TMARTYAEWLPSSGYALQDLPSISFSKIETGYDNVYSEVWVPVKVREEPES

Specific function: Transcriptional Activator Of The Superoxide Response Regulon Of E.Coli That Includes At Least 10 Genes Such As Soda, Nfo, Zwf And Micf. Binds The DNA Sequence 5'-Gcacn(7)Caa-3'. It Also Facilitates The Subsequent Binding Of RNA Polymerase To The Micf And

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 2500 (L-broth) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33622; Mature: 33622

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCC
NEKLVHGSSVTEIAYLYGYQSVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKG
CCCEECCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECC
GTSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKSITEEQRAHMHELGNLYPHRA
CCCEEEEECCCHHEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LNASFNFDDGHLEEEGYLTHMIGFATTREIKYDDLEVISIPKSLWAIFPNTGPFPNTLQE
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHEECCCCCCCCHHHHH
TMARTYAEWLPSSGYALQDLPSISFSKIETGYDNVYSEVWVPVKVREEPES
HHHHHHHHHCCCCCCCHHCCCCCCHHHHHCCHHHHHHHHEEEEEECCCCCC
>Mature Secondary Structure
MVKALNELMDFIEQHLTEELLDSEITKITGLSAHHFKRMFSYMSGMTLHTYIRNRRFSIA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHCCCCCCC
NEKLVHGSSVTEIAYLYGYQSVEGFSRAFRDWSGHLPSEVMKNHFQKSFPRFTFYIDIKG
CCCEECCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEEECC
GTSMEFKLEEKEAFQIVGVSKRVPIQFEGVNEEIMELAKSITEEQRAHMHELGNLYPHRA
CCCEEEEECCCHHEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
LNASFNFDDGHLEEEGYLTHMIGFATTREIKYDDLEVISIPKSLWAIFPNTGPFPNTLQE
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHEECCCCCCCCHHHHH
TMARTYAEWLPSSGYALQDLPSISFSKIETGYDNVYSEVWVPVKVREEPES
HHHHHHHHHCCCCCCCHHCCCCCCHHHHHCCHHHHHHHHEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]