| Definition | Exiguobacterium sp. AT1b, complete genome. |
|---|---|
| Accession | NC_012673 |
| Length | 2,999,895 |
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The map label for this gene is yueF [H]
Identifier: 229916029
GI number: 229916029
Start: 264732
End: 265832
Strand: Direct
Name: yueF [H]
Synonym: EAT1b_0297
Alternate gene names: 229916029
Gene position: 264732-265832 (Clockwise)
Preceding gene: 229916023
Following gene: 229916030
Centisome position: 8.82
GC content: 45.96
Gene sequence:
>1101_bases TTGGAGCTTAATCGTCAACTTATTTGGAAACTGAGTGTAATCGGACTGATCTTGCTCGTCTTATGGCGTGTCATCAGTGA ACCGGATACCATCTCACGTGTCTTACAATACACGTTTCAGTTACTGACCCCTATCATCATGGGGATCGCCATCGCCTTGT TACTCAACACCGTACTCTCGTATATTGAAGAACGGTTCCACTTGAAGCGATATCAAGGACTACTCATCGTCTATATCACG TTCATCGGCATCTTGGCAATTTCGGTCGTCACGTTGTTCCCGCGGATTTACTCGAGTCTGTCATCACTCATCAATGAGTT ACCGGTTTATATCCGTCAAATCGACGTGTTTTTAGGTGAAGTGAACAATTACTTGAAAGACTATAACGCGACGATCGCCC AAGCGATTGATTTTGCGCGCTTCGAGGATCGTTACTCTGGATGGGTCGAGACGGCCGTCCTCTCTTCCGTTAGTTATGTC TCTAGTTTTACAATGACATTGATCAACTTCTTGATTGGGATTGTGATCTCCATCTACTTGTTAAAGGACAAAGAAGTCTT CGCTCGTATGTTCAAGCGTCTTCTCTATGCGCTATTACCCGTCGGCACTGCGAAGACGACAATCGATATCTTTCAAGAGA TGGATTATATCTTTAAGCGATATATCATTGGGAAGTCGCTCGACTGTCTGATTATTGGAGTGCTAGCAGTCATCGGACTC TTGATCATCGGGGCCCCATATGCCCTACTTCTCGGAGTCATCGTCGGCGTCTTAAACTTCATCCCATATGTCGGACCGCT ACTCGGGATGATCCCAGCGTTTATCATCACCTATTTCTATGATCCGTTCACCGCCGTATTGGTACTCTTGTTCATCTTCT TGTTACAGCAGTTTGACGGATTGTGGCTCGGACCGAAGATTCTCGGAGATAGTGTCGGCATCACACCATTTTGGGTCATC ACATCGATTATCATCGGAGGAAGCCTGTTCGGCCTCATCGGGATGTTCGTGAGCGTGCCGATCACGGCCATGATTCAAGT CGTCTTGTCTCGCCTCATCGATTATCGACTGAACCGAAAAAATCTAAATGAATTACTTTGA
Upstream 100 bases:
>100_bases GTCAAACATTTTTTTCAAAGAGAACATCTATTGAATCCTTTTCAAAAAACATTCATAGTAAAAGAGTAGAAAAATTATAT TTGTATGAGGGGATAGAGCA
Downstream 100 bases:
>100_bases TTCACCTCATAAATTTGTTGACACATTGAGGAAATGTGTCATACAGTTGAAGAGAAGAACACAATTAACAGAAAGGAGAG GTTCCCATGTCAGTAGTATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 366
Protein sequence:
>366_residues MELNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLSYIEERFHLKRYQGLLIVYIT FIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGEVNNYLKDYNATIAQAIDFARFEDRYSGWVETAVLSSVSYV SSFTMTLINFLIGIVISIYLLKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVIGL LIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQFDGLWLGPKILGDSVGITPFWVI TSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLNRKNLNELL
Sequences:
>Translated_366_residues MELNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLSYIEERFHLKRYQGLLIVYIT FIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGEVNNYLKDYNATIAQAIDFARFEDRYSGWVETAVLSSVSYV SSFTMTLINFLIGIVISIYLLKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVIGL LIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQFDGLWLGPKILGDSVGITPFWVI TSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLNRKNLNELL >Mature_366_residues MELNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLSYIEERFHLKRYQGLLIVYIT FIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGEVNNYLKDYNATIAQAIDFARFEDRYSGWVETAVLSSVSYV SSFTMTLINFLIGIVISIYLLKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVIGL LIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQFDGLWLGPKILGDSVGITPFWVI TSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLNRKNLNELL
Specific function: Unknown
COG id: COG0628
COG function: function code R; Predicted permease
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0118 (perM) family [H]
Homologues:
Organism=Escherichia coli, GI1788838, Length=359, Percent_Identity=25.0696378830084, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI87082271, Length=303, Percent_Identity=23.1023102310231, Blast_Score=63, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002549 [H]
Pfam domain/function: PF01594 UPF0118 [H]
EC number: NA
Molecular weight: Translated: 41352; Mature: 41352
Theoretical pI: Translated: 8.71; Mature: 8.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLS CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIEERFHLKRYQGLLIVYITFIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNNYLKDYNATIAQAIDFARFEDRYSGWVETAVLSSVSYVSSFTMTLINFLIGIVISIYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVIGL HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQFDG HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LWLGPKILGDSVGITPFWVITSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLNRK CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NLNELL HHHHCC >Mature Secondary Structure MELNRQLIWKLSVIGLILLVLWRVISEPDTISRVLQYTFQLLTPIIMGIAIALLLNTVLS CCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YIEERFHLKRYQGLLIVYITFIGILAISVVTLFPRIYSSLSSLINELPVYIRQIDVFLGE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VNNYLKDYNATIAQAIDFARFEDRYSGWVETAVLSSVSYVSSFTMTLINFLIGIVISIYL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LKDKEVFARMFKRLLYALLPVGTAKTTIDIFQEMDYIFKRYIIGKSLDCLIIGVLAVIGL HCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH LIIGAPYALLLGVIVGVLNFIPYVGPLLGMIPAFIITYFYDPFTAVLVLLFIFLLQQFDG HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC LWLGPKILGDSVGITPFWVITSIIIGGSLFGLIGMFVSVPITAMIQVVLSRLIDYRLNRK CCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH NLNELL HHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]